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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaactattagtggcacacattgttttccttcggtcccagactgtaacagtgttacatcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACATCACTGGTTTTCTTCAAGAGTGATCCT

Basic information

species Zea mays
transcript GRMZM2G036872_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036872_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g46450.1 (Oryza sativa), 3'ss of exon 2
gtaaaactattagtggcacacattgttttccttcg-------gtcccagactgtaacagt---------gttacatcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACATCACTGGTTTTCTTCAAGAGTGATCCT
||||| ||||| | |  |  |||   ||   | |         |  ||||   | ||  |         | ||       | |||||||||||||||| | |||||||| || |||||||||||||| ||||||||||| |||||||||||||| || |||
gtaaa-ctatttgggttatgcatcagttatttccacctgtgcatatcagagcatcaccattaattttcagctatgatttttaagGAATTGGATGGAAATCATGGAAAAAGCGTTGGTTCATCCTCACTCGAACATCACTTGTTTTCTTCAAGAGCGACCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89247360|gb|DY619146.1|DY619146
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|211508932|gb|FL160996.1|FL160996
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|149074588|gb|EE162991.2|EE162991
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|211508931|gb|FL160995.1|FL160995
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|211508933|gb|FL160997.1|FL160997
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
EST: gi|211508930|gb|FL160994.1|FL160994
EST:     GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAG                         GAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT
genomic: GTATTTAAGAGTGGCCCTCTCTTCATATCATCGAAAGgtaaaactat ... atcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcacacattgttttccttcggtcccagactgtaacagtgttacatcacattagGAATTGGATGGAAAACGTGGAAAAAACGCTGGTTCATCCTCACACGAACATCACTGGTTTTCTTCAAGAGTGATCCT
                              ctgtaac  putative branch site (score: 3)
        attgtttt  TA-rich tract