1 5' 3' | 2 5' 3' |
...cgacatccacatgcatgcatataatcgacctatatatatatagcatgttcatcttagtagtaacatcgacaccgtttccttggaatgaaaatctcaacagAAGCAGAGAGTAGCAGCAAGAACATGGATATCGGAGATGGGTTGGGCGCACAGATACTGGGAAGTGCACTCTTGTCCAAGGAACAAGATCAAGCCATGGA
species | Zea mays |
transcript | GRMZM2G036297_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tgttcatcttagtagtaacatcgacaccgtttccttggaatgaaaatctcaacagAAGCAGAGAGTAGCAGCAAGAACATGGATATCGGAGATGGGTTGGGCGCACAGATACTGGGAAGTGCACTCTTGTCCAAGGAACAAGATCAAGCCATGGA
tagtaac putative branch site (score: 8)
aatgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgacatccacatgcatgcatataatcgacctatatatatatagcatgttcatcttagtagtaacatcgacaccgtttccttggaatgaaaatctcaacagAAGCAGAGAGTAGCAGCAAGAACATGGATATCGGAGATGGGTTGGGCGCACAGATACTGGGAAGTGCACTCTTGTCCAAGGAACAAGATCAAGCCATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -catccac
- - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgaaa