1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcgtcatggtgcttgatattttcctagggcgtacacttttcaaccactcctttaaaatgccatatagtctccttccctccctcccaatatgctaaagaaaactggacttcactttgtagtctatatttgttcagtgtacccttacctgttaatctttcttttgcagCAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATG
species | Zea mays |
transcript | GRMZM2G036050_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTTAGGCTTGGCCTTTTGACCATGTATGACCATTTCCTGTCTCGATGG CAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTCEST: gi|31361140|gb|CD445497.1|CD445497
genomic: TGTTTAGGCTTGGCCTTTTGACCATGTATGACCATTTCCTGTCTCGATGGgtaagcgtca ... tcttttgcagCAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTC
EST: TGTTTAGGCTTGGCCTTTTGACCATGTATGACCATTTCCTGTCTCGATGG CAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTCEST: gi|149005531|gb|EE040090.2|EE040090
genomic: TGTTTAGGCTTGGCCTTTTGACCATGTATGACCATTTCCTGTCTCGATGGgtaagcgtca ... tcttttgcagCAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTC
EST: TGTTTAGGCTTGGCCTTTTGACCATGTATGACCATTTCCTGTCTCGATGG CAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTC
genomic: TGTTTAGGCTTGGCCTTTTGACCATGTATGACCATTTCCTGTCTCGATGGgtaagcgtca ... tcttttgcagCAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTC
ctttgtagtctatatttgttcagtgtacccttacctgttaatctttcttttgcagCAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATG
tgttaat putative branch site (score: 3)
ttaatctttctttt CT-rich tract
ttaatctttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgtcatggtgcttgatattttcctagggcgtacacttttcaaccactcctttaaaatgccatatagtctccttccctccctcccaatatgctaaagaaaactggacttcactttgtagtctatatttgttcagtgtacccttacctgttaatctttcttttgcagCAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG