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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgaatatttttctccctcatgcttaaataacaaggtttatactaaattattactaatctaatgtttacatgaccgttctgcttttgtgaaaatggcagGTATATACTAATGGCAGAACCAGACCATATATTTGTGAAACCTCTACCAAATTTGGCCCATGACGATGACCCAGCAGCATTTCCCTTCTTTTACATTACA

Basic information

species Zea mays
transcript GRMZM2G035595_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035595_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g16600.1 (Oryza sativa), 3'ss of exon 2
attgaatatttttctccctcatgcttaaataacaaggtttatactaaattattactaat---ctaatgtttacatgaccgttctgcttttgtgaaa-atggcagGTATATACTAATGGCAGAACCAGACCATATATTTGTGAAACCTCTACCAAATTTGGCCCATGACGATGACCCAGCAGCATTTCCCTTCTTTTACATTACA---
 |   ||      |    |   || |   |||     ||| | ||||| || |    ||   || |||| |     |   ||||| |||  ||||| ||||||| || ||| | |||||||||||||| ||||||||||||| |||| |||||||||| ||||    |||||| ||||||||||| || |||||||||||||||   
-tgagatgaagaacattgttg-gcgttggtaattta-tttgtgctaaaataatgtggatgttctgatgtgttttcaatt-ttctgttttgttgaaacatggcagATACATATTGATGGCAGAACCAGATCATATATTTGTGAGACCTTTACCAAATTTAGCCCG---CGATGATCCAGCAGCATTCCCTTTCTTTTACATTACACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32795199|gb|CD947435.1|CD947435
EST:     AGGCCGTGGGCATTTGTGCAGTGGCTTCAGAAAGCAAAGATTGAAGAAGA                         GTATATACTAATGGCAGAACCAGACCATATATTTGTGAAACCTCTACCAAA
genomic: AGGCCGTGGGCATTTGTGCAGTGGCTTCAGAAAGCAAAGATTGAAGAAGAgtaagttccg ... aaaatggcagGTATATACTAATGGCAGAACCAGACCATATATTTGTGAAACCTCTACCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattattactaatctaatgtttacatgaccgttctgcttttgtgaaaatggcagGTATATACTAATGGCAGAACCAGACCATATATTTGTGAAACCTCTACCAAATTTGGCCCATGACGATGACCCAGCAGCATTTCCCTTCTTTTACATTACA
     attactaatctaat  TA-rich tract