1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcagctacagttgacactgatttatttggttaagctgctattagcttctaatctttatgttctatctaatctgacatgcatgacatgattttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG
species | Zea mays |
transcript | GRMZM2G035417_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|29130299|gb|CB381003.1|CB381003
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|71448259|gb|DR829309.1|DR829309
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|78121958|gb|DV540342.1|DV540342
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|78107573|gb|DV525991.1|DV525991
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|9825075|gb|BE575292.1|BE575292
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGNTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|5566780|gb|AI881646.1|AI881646
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|94472331|gb|EB701289.1|EB701289
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|20803264|gb|BQ294314.1|BQ294314
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|91876714|gb|EB406671.1|EB406671
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|211524983|gb|FL195251.1|FL195251
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGYKGANN-GAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|74244160|gb|DT652074.1|DT652074
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|76908411|gb|DV162927.1|DV162927
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTEST: gi|89763929|gb|DY690917.1|DY690917
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
EST: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAG GCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
genomic: AAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtg ... tttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCT
cttctaatctttatgttctatctaatctgacatgcatgacatgattttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG
ttttttgct CT-rich tract
atgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagctacagttgacactgatttatttggttaagctgctattagcttctaatctttatgttctatctaatctgacatgcatgacatgattttttgctagGCTAAGGCATCATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - gctacag
- - - - - - - - actgatt
- - - - - - - - - - - - - - - - - gctgcta
- - - - - - - - - - - - - - - - - - - - - -agcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga