Sequence
atgc intronic sequence ATGC exonic sequencegttagtactactattactagtcactttgcttcctcatgccttagcatgcaacctacatttactgctatttgcattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G035150_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g64219.1 (Oryza sativa), 3'ss of exon 2
----------------------------gttagtactactattactagtcactttgcttcctcatgccttagcatgcaacctacatttactgctatttgcattctcaaacatcactgtgagtgtttctatag--------tctcttcattttgctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG
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gtaactaactctctactgcttattccccaccttctcttcacccattcatca-tttaaatattcttgtcaaaatattaatccattaatgattaccttgcttcttcctcttcttcttcttgatgctacttgttggttaccctttccttccttctcttattgtagCATGTTCCAAAAACTAACGGGGACATTCCTTCTGTTGATGAAGCCTTTTCAGATCACCAAAGACTCCTTCACAG
upper sequence: GRMZM2G035150_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA10G35300.3 (Glycine max), 3'ss of exon 3
gttagtactactattactagtcactttgcttcctcatgccttagcatgcaacctacatttactgctatttgcattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG
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------------------atacatatgaatttctaat--ttaagca---atattacagt-atagatat--gaatttctaatttaagcaacaattcattcacttacttttcttgttcatgtttgcagCATGTTCCTAAAACCAATGAAAAAATACCATCTGATGACGAAGAAATATCAGATCATCAAAGACTTCTAGACAG
upper sequence: GRMZM2G035150_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA20G32220.1 (Glycine max), 3'ss of exon 3
gttagtactactattactagtcactttgcttcctcatgccttagcatgcaacctacatttactgct---atttgcattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG
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------------------------tgtacaagactgaagtttgataggttatcaatatt-acagtttaaatatggatttctaa---tttaagtaacaattcatgcacttctcttgttc-atgtttgcagCATGTTCCTAAAACCAATGAAAAAATACCATCTGATGATGAAGAAATATCAGATCATCAAAGGCTTCTAGACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG
tctcttcattttgct CT-rich tract
tttctata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtactactattactagtcactttgcttcctcatgccttagcatgcaacctacatttactgctatttgcattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA