1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgccccttctatccatattccaaaacagcatccatccatcctttggctgtattattattgtcaagtgttacacacacctcctttagcttctcaagAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCCCTGGAGATGACAATAACGTCCAGGACAGCCAGCAATGCTTGATAGAGCTCATGGATAA
species | Zea mays |
transcript | GRMZM2G035150_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG AGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCCCTGGAGATGEST: gi|78092884|gb|DV521258.1|DV521258
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaagAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCCCTGGAGATG
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|78092884|gb|DV521258.1|DV521258
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|78092884|gb|DV521258.1|DV521258
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|78092884|gb|DV521258.1|DV521258
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|78092884|gb|DV521258.1|DV521258
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|78092884|gb|DV521258.1|DV521258
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|78092884|gb|DV521258.1|DV521258
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71427954|gb|DR809004.1|DR809004
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71427954|gb|DR809004.1|DR809004
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71427954|gb|DR809004.1|DR809004
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71427954|gb|DR809004.1|DR809004
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71427954|gb|DR809004.1|DR809004
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71427954|gb|DR809004.1|DR809004
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71427954|gb|DR809004.1|DR809004
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|74235679|gb|DT643593.1|DT643593
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|74235679|gb|DT643593.1|DT643593
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|74235679|gb|DT643593.1|DT643593
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|74235679|gb|DT643593.1|DT643593
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|74235679|gb|DT643593.1|DT643593
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|74235679|gb|DT643593.1|DT643593
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|74235679|gb|DT643593.1|DT643593
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50327717|gb|CO522843.1|CO522843
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50327717|gb|CO522843.1|CO522843
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50327717|gb|CO522843.1|CO522843
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50327717|gb|CO522843.1|CO522843
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50327717|gb|CO522843.1|CO522843
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50327717|gb|CO522843.1|CO522843
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50327717|gb|CO522843.1|CO522843
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71449152|gb|DR830202.1|DR830202
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71449152|gb|DR830202.1|DR830202
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71449152|gb|DR830202.1|DR830202
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71449152|gb|DR830202.1|DR830202
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71449152|gb|DR830202.1|DR830202
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71449152|gb|DR830202.1|DR830202
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|71449152|gb|DR830202.1|DR830202
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|76291810|gb|DV031378.1|DV031378
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|76291810|gb|DV031378.1|DV031378
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|76291810|gb|DV031378.1|DV031378
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|76291810|gb|DV031378.1|DV031378
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|76291810|gb|DV031378.1|DV031378
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|76291810|gb|DV031378.1|DV031378
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|76291810|gb|DV031378.1|DV031378
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50331812|gb|CO526938.1|CO526938
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50331812|gb|CO526938.1|CO526938
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50331812|gb|CO526938.1|CO526938
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50331812|gb|CO526938.1|CO526938
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50331812|gb|CO526938.1|CO526938
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50331812|gb|CO526938.1|CO526938
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50331812|gb|CO526938.1|CO526938
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50324082|gb|CO519208.1|CO519208
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50324082|gb|CO519208.1|CO519208
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50324082|gb|CO519208.1|CO519208
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50324082|gb|CO519208.1|CO519208
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50324082|gb|CO519208.1|CO519208
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50324082|gb|CO519208.1|CO519208
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|50324082|gb|CO519208.1|CO519208
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAG CEST: gi|87156327|gb|DY401116.1|DY401116
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTCCATGTAGAACCAG CEST: gi|87156327|gb|DY401116.1|DY401116
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTCCATGTAGAACCAG CEST: gi|87156327|gb|DY401116.1|DY401116
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTCCATGTAGAACCAG CEST: gi|87156327|gb|DY401116.1|DY401116
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTCCATGTAGAACCAG CEST: gi|87156327|gb|DY401116.1|DY401116
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTCCATGTAGAACCAG CEST: gi|87156327|gb|DY401116.1|DY401116
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTCCATGTAGAACCAG CEST: gi|87156327|gb|DY401116.1|DY401116
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
EST: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTCCATGTAGAACCAG C
genomic: TGTTCTCACGCAGCAATGGCTTCGCCCACGCGCCGTGCATGTAGAACCAGgtatgcccct ... gcttctcaag-
ctttggctgtattattattgtcaagtgttacacacacctcctttagcttctcaagAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCCCTGGAGATGACAATAACGTCCAGGACAGCCAGCAATGCTTGATAGAGCTCATGGATAA
cctcctttagcttctc CT-rich tract
tattattattgtcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccccttctatccatattccaaaacagcatccatccatcctttggctgtattattattgtcaagtgttacacacacctcctttagcttctcaagAGGCAGGGACCAGGGAGGAACCTTTCAGCACCTGCTCAAGCCCTGGAGATGACAATAACGTCCAGGACAGCCAGCAATGCTTGATAGAGCTCATGGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA