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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC

Basic information

species Zea mays
transcript GRMZM2G034794_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
-gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttcac-tattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
 | |  |  || || |      | | |    ||   | |||    | |  | || | | | |  |    |  | || | | | |  |  ||  |||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||||
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgt--cgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 2
gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatg--ctttgaactagttcactat---taaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
            ||    |        | ||||  |||| | | |||  ||  | |  ||       | | |   ||| |  | | ||||  |   ||    ||||| ||||| ||||||||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||
agccaaaatgtattcacatgctgctgtctgatt-cacttttgaatgttttggccctataatccaaatattgtgcataactattttttgaccttgcttt----cagGGCTATGTGGTTTACCGTGTTCGCGTCAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATTACCC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G41620.2 (Glycine max), 3'ss of exon 2
gatagtttcagttttgagtagaatgaacagattgtactt--gtcagtgta-atgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
 |   ||  | | ||| |   | ||      |  |  |   |    || | || |  |    |  |||| ||  |  |||  | |||   |||     | ||||| |||||  |||||||||| ||||||||| | |||||| | ||||| || || || ||||||||||| ||||| ||||| |   |||||||  | ||||
-agtattgtattattgtgccaagtgtgtctgtccttgtaaagctgttgcacattcccttgtttgtttcagtacaatgttgattgtgat--tatgacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 2
gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctata-tttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
   | |||| ||||  | |        | | |  |   | |      | |||   |      ||||   | | || || |     |  | | | | |||||||||||||  | || ||||| ||||| || || ||||| ||||||||||| || || || |||||||| ||||| ||||| |   |||| ||| |||| |
-tgattttctgtttacatttttccctgctggtgctctatatttagtcactgcagcgttaatattcatattaatatcgtgtacatgttaacaatcttttcagGGTTATGTGATCTATCGTGTACGTGTAAGACGCGGTGGAAGGAAGAGGCCAGTCCCAAAGGGTATTGTGTATGGTAAGCCCACAAACCAAGGTGTCACTC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgt-aatgctttgaactagttcact---attaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
    |||| |  ||     | | ||  |  |||    |  | ||  | ||  |  |||     || |||   |||| | || |    ||| | |  |  || |||| |||||| | || ||||| |||||||| ||||||||  ||||||||||||| || || || ||||| ||||| ||||| |   |||||||| ||||||
---tgtttaaaattatgacaaactggccc-attaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
gatagtttcagttttgagtagaatgaacagattgtact-tgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
  || |  |  | | ||      |   | | ||||| | | | ||  |     |     |||  ||   |  ||     |||||  | ||  | | |||||||||||||  |||| ||||| |||||||| ||||||||  |||||||||||||||| || || ||||| ||||| ||||| |   |||| ||| | ||||
tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtac-tgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S152_141V6.1 (Physcomitrella patens), 3'ss of exon 2
--gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttc-actattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
   ||   |  |  |||     | || |        |  |  | | |  ||   |||   |  |||| ||| || |    |   || |  |||  ||||  |||| ||||| || ||||||||||| ||| | ||||| |||||||||||||| ||| | || |||||||| ||||| || || ||| |||||||||| || |
gtcatgactctatctttttagggcatcatttcgaattcttcataatttcaagtgtttactcctgttctactcttga--cattggtgtcattat-cttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAGTGGCGAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATTACAC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S28_15V6.1 (Physcomitrella patens), 3'ss of exon 2
gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatgc--tttgaactagttcactattaaattgtctctgactctatatttgt-tcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
  |  | ||||| ||||||| |||  |    |  | |||||  || |  | |  |||    | |   ||| |  |  ||  | |  || | | ||||| |||||| || || || |||||||| |||||  | ||||| |||||||||||||||||  |||| |||||||| || || ||||||||| |||||||||| || |
-ctgctgtcagtcttgagtaaaatacattc-tcttgcttgtttgtctccttcaatttcttgtggggtact-tggagctgattatttctgtgtgtttgtatcagGGCTACGTGGTGTACCGTGTTCGTGTGCGCCGTGGAGGCAGGAAGAGGCCTGTTGCTAAGGGTATTGTGTACGGAAAGCCAAAGAACCAGGGTATTACAC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
-gatagttt-cagt-tttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
  ||| ||| |||       || |   |      | |    | ||  | | ||   || |  |   |   | ||    ||    ||   ||  | |    ||||| ||||| || ||||||||||||||  | ||||| |||||||||||||| ||  | || |||||||| ||||| ||||| ||| |||||||||| || |
ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaact---gcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ27946 (Selaginella moellendorffii), 3'ss of exon 2
gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
                               |   | || ||  |      ||| |     | |  || ||  || || ||   ||| | ||     ||||| || ||||| ||||||||||||||  | || || ||| | |||||||| ||  | || || ||||||||||| ||||| ||| |||||||||||||||
------------------------------gtaaaatttctcctt-----tcttcgtgtgtgctagctctttgatcgtttcgtgctcga-atcctcacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTCTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

upper sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 2
gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
                               |   | || ||  |      ||| |     | |  || ||  || || ||   ||| | ||     ||||| || ||||| ||||||||||||||  | || || ||| | |||||||| ||  | || || ||||||||||| ||||| ||| |||||||||||||||
------------------------------gtaaaatttctcctt-----tcttcgtgtgtgctagctctttgatcgtttcgtgctcga-atcctcacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTTTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211251600|gb|FL262015.1|FL262015
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|50332713|gb|CO527839.1|CO527839
EST:     GCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|76292095|gb|DV031663.1|DV031663
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251604|gb|FL262019.1|FL262019
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149089967|gb|EE179256.2|EE179256
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|37416290|gb|CF645795.1|CF645795
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGCGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323270|gb|FL262059.1|FL262059
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211249376|gb|FL262006.1|FL262006
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78119640|gb|DV538024.1|DV538024
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTTCCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323260|gb|FL262049.1|FL262049
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323266|gb|FL262055.1|FL262055
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321085|gb|FL262032.1|FL262032
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71443996|gb|DR825046.1|DR825046
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325438|gb|FL262068.1|FL262068
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|30306793|gb|CD001466.1|CD001466
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251607|gb|FL262022.1|FL262022
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78119641|gb|DV538025.1|DV538025
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|76292094|gb|DV031662.1|DV031662
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTTCCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|50327061|gb|CO522187.1|CO522187
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251602|gb|FL262017.1|FL262017
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|9254923|gb|BE345391.1|BE345391
EST:     CCACTCGCCCTGTACTTTGGTCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: CCACTCGTCCTG-AC-AAGG-CGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321090|gb|FL262037.1|FL262037
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148931461|gb|EC874453.2|EC874453
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325435|gb|FL262065.1|FL262065
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|9254922|gb|BE345390.1|BE345390
EST:     AAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: AAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325441|gb|FL262071.1|FL262071
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGCGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251601|gb|FL262016.1|FL262016
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251603|gb|FL262018.1|FL262018
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211249381|gb|FL262011.1|FL262011
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211249382|gb|FL262012.1|FL262012
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|76014099|gb|DT941269.1|DT941269
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|74245396|gb|DT653310.1|DT653310
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321086|gb|FL262033.1|FL262033
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|86466877|gb|DY233247.1|DY233247
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60345779|gb|DN212752.1|DN212752
EST:     AGGCGCGCCGCCTGGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCATGTTTAGGCGTGGTGGCAGGAAGAGGCC
genomic: AGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTG-TTAGGCGTGGTGGCAGGAAGAGGCC
EST: gi|116819689|gb|EC862837.1|EC862837
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148937681|gb|EC881877.2|EC881877
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|50332714|gb|CO527840.1|CO527840
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323264|gb|FL262053.1|FL262053
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60357352|gb|DN224325.1|DN224325
EST:     AAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGGGTGGTGGCAGGAAGAGGCCT
genomic: AAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325433|gb|FL262063.1|FL262063
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148957396|gb|EC903451.2|EC903451
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31361170|gb|CD445527.1|CD445527
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149089966|gb|EE179255.2|EE179255
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31354615|gb|CD438972.1|CD438972
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|32835250|gb|CD974928.1|CD974928
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321088|gb|FL262035.1|FL262035
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71443997|gb|DR825047.1|DR825047
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323259|gb|FL262048.1|FL262048
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325430|gb|FL262060.1|FL262060
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211249373|gb|FL262003.1|FL262003
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCCGTGTCCGTGTTAGGCGTGGTGGCMGGAAGAGGCC
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACC-GTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCC
EST: gi|211323267|gb|FL262056.1|FL262056
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251605|gb|FL262020.1|FL262020
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323256|gb|FL262045.1|FL262045
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78073803|gb|DV502237.1|DV502237
EST:     ACTCGTCCTGCCAAGGCGCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: ACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323263|gb|FL262052.1|FL262052
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60399362|gb|DN232176.1|DN232176
EST:     GGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211249374|gb|FL262004.1|FL262004
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325442|gb|FL262072.1|FL262072
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251614|gb|FL262029.1|FL262029
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321097|gb|FL262044.1|FL262044
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325432|gb|FL262062.1|FL262062
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|113702678|gb|EE680182.1|EE680182
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325431|gb|FL262061.1|FL262061
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211249383|gb|FL262013.1|FL262013
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60356453|gb|DN223426.1|DN223426
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325436|gb|FL262066.1|FL262066
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60343082|gb|DN210055.1|DN210055
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321095|gb|FL262042.1|FL262042
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|33102586|gb|CF062546.1|CF062546
EST:     CCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: CCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|16925583|gb|BM078651.1|BM078651
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCATCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60397206|gb|DN230022.1|DN230022
EST:     ACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: ACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|50327060|gb|CO522186.1|CO522186
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60349241|gb|DN216214.1|DN216214
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323258|gb|FL262047.1|FL262047
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321083|gb|FL262030.1|FL262030
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251611|gb|FL262026.1|FL262026
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325443|gb|FL262073.1|FL262073
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321091|gb|FL262038.1|FL262038
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321084|gb|FL262031.1|FL262031
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148957040|gb|EC903000.2|EC903000
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|101384828|gb|EB814460.1|EB814460
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211249384|gb|FL262014.1|FL262014
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323268|gb|FL262057.1|FL262057
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211249375|gb|FL262005.1|FL262005
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251608|gb|FL262023.1|FL262023
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149104485|gb|EE289932.2|EE289932
EST:     GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211321094|gb|FL262041.1|FL262041
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|32835930|gb|CD975608.1|CD975608
EST:     CCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: CCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|101384826|gb|EB814459.1|EB814459
EST:     GCCCCACTCGTCTTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325439|gb|FL262069.1|FL262069
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211325437|gb|FL262067.1|FL262067
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211251613|gb|FL262028.1|FL262028
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTA
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTA
EST: gi|211325440|gb|FL262070.1|FL262070
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCC
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCG-TGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCC
EST: gi|211323257|gb|FL262046.1|FL262046
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|50334250|gb|CO529376.1|CO529376
EST:     ACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: ACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211249377|gb|FL262007.1|FL262007
EST:     GGCCCACTCGCCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 164

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 38

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 23

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 27

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcc ... atttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC
                                 ctctgac  putative branch site (score: 27)
                                              tttgttc  putative PPT
                 ttcactattaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC

- - - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - -gtacttg
- - - - - - - - - - - - - - - - - - - - - - - -aatgctt