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gtccgtatatatacttgattggttgatgccatggactctctccctatctttctgcgcctagcctaatgacaattcagtaggatgtatgccaattgatgagtatagcgtagatcgatgttggccctgaatgcagcatgccctaatgtggtattgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG
species | Zea mays |
transcript | GRMZM2G034143_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCAEST: gi|60344955|gb|DN211928.1|DN211928
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCAEST: gi|211492747|gb|FL134690.1|FL134690
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCAEST: gi|211489870|gb|FL134684.1|FL134684
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCAEST: gi|211489869|gb|FL134683.1|FL134683
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCAEST: gi|211492748|gb|FL134691.1|FL134691
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCAEST: gi|211489866|gb|FL134680.1|FL134680
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCAEST: gi|211492749|gb|FL134692.1|FL134692
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCAEST: gi|211492744|gb|FL134687.1|FL134687
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCAEST: gi|211492751|gb|FL134694.1|FL134694
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
EST: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTG GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
genomic: ACCAACGACGTCTGGCCTGGAGAATGGCCATCAGGAGCCCTTTGTTATTGgtccgtatat ... ttgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCA
cgtagatcgatgttggccctgaatgcagcatgccctaatgtggtattgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG
ccctaat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtatatatacttgattggttgatgccatggactctctccctatctttctgcgcctagcctaatgacaattcagtaggatgtatgccaattgatgagtatagcgtagatcgatgttggccctgaatgcagcatgccctaatgtggtattgggtacagGCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT