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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaaaataactcgcagcagcaaaaaagattagtagattccatgtccttggaccctttttaaattattatgggaactttcttcttttcaaatgcgatatagGGTGCTCACAGTGACGAGCTTGCTGCTGCTTCAAGGCTGGAAGATAGCATCAACTTTTATCAAACTTCGATTCCTGATGTTGCTAAGCTTTTCCATATCG

Basic information

species Zea mays
transcript GRMZM2G033829_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033829_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g01010.1 (Oryza sativa), 3'ss of exon 2
tgaaaataactcgcagcagcaaaaaagattagtagattccatgtccttggaccctttttaaat---tattatgggaactt-tcttcttttcaaatgcga-----tatagGGTGCTCACAGTGACGAGCTTGCTGCTGCTTCAAGGCTGGAAGATAGCATCAACTTTTATCAAACTTCGATTCCTGATGTTGCTAAGCTTTTCCATATCG
    |    |||    |  | |   |  | |          | |   |  |  |||  |  |     | |||    | |  |||||||||||||  | |     || |||||||||||||||| ||| ||||||||||||| ||||||||||||   ||||||||||| || ||||| | |||||||||||| |||||||| ||  | |
--gtaccttctcttctcttctactcaagtcaaccccgatgctctttctaaattcttactgcacacacactattattattaatcttcttttcaaaccctactacttacagGGTGCTCACAGTGATGAGATTGCTGCTGCTTCGAGGCTGGAAGATGCTATCAACTTTTACCAGACTTCCAATCCTGATGTTGCCAAGCTTTTTCACCTTG

upper sequence: GRMZM2G033829_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G29550.1 (Glycine max), 3'ss of exon 2
-tgaaaataactcgcagcagcaaaaaagattagtag-attccatgtccttggaccctttttaaattattatgggaactttcttctttt-caaatgcgatatagGGTGCTCACAGTGACGAGCTTGCTGCTGCTTCAAGGCTGGAAGATAGCATCAACTTTTATCAAACTTCGATTCCTGATGTTGCTAAGCTTTTCCATATCG
     | ||| |  |||  ||   |    | ||| | | | | ||    |    | || || |||| |||||     ||| |  | |     ||    |  ||||| || | ||||| |||||||||||||||||||| || || |||    |||| ||||||||||||  |  ||||||||| || |||||||||||||| |
tctggattaaattacag--gcttgactcttgagttgtaatacttgaatgtatgacattgttgaatt-ttatgctttatttatcttgtgatgcataatgtgcagGGTCCTGAGAGTGAGGAGCTTGCTGCTGCTTCAAGACTTGAGGATGATGTCAATTTTTATCAAACTGTGGATCCTGATGTGGCAAAGCTTTTCCATATTG

upper sequence: GRMZM2G033829_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G40130.1 (Glycine max), 3'ss of exon 2
tgaaaataactcgcagcagcaaaaaagattagtagattccatgtccttggaccctttttaaattatta----tgggaactttcttcttttcaaatgcg----atatagGGTGCTCACAGTGACGAGCTTGCTGCTGCTTCAAGGCTGGAAGATAGCATCAACTTTTATCAAACTTCGATTCCTGATGTTGCTAAGCTTTTCCATATCG
      | | || | | |  |||  | |    |    |  |  | |||| |    | | ||||| ||     |      ||  || | ||   ||||      |  ||||| || | ||||| ||||||||||||||||||||||| || |||    |||| ||||||||||||  || ||||||||| || |||||||||||||| |
-----ttgaatctctggattaaattataggcttgagctgta-atacttgaatg--tatgaaattgttggtttttatgctttatttatcttgtgatgcataatgtgcagGGTCCTGAGAGTGAGGAGCTTGCTGCTGCTTCAAGGCTTGAGGATGATGTCAATTTTTATCAAACTGTGAATCCTGATGTGGCAAAGCTTTTCCATATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101399348|gb|EB821547.1|EB821547
EST:     TACTCACCGGGGATGACAAAGCCGTCATTGCCTTCCTCGACACTCTAACC                         GGTGCTCACAGTGACGAGCTTGCTGCTGCTTCAAGGCTGGAAGATAGCATC
genomic: TACTCACCGGGGATGACAAAGCCGTCATTGCCTTCCTCGACACTCTAACCgtacgaacaa ... tgcgatatagGGTGCTCACAGTGACGAGCTTGCTGCTGCTTCAAGGCTGGAAGATAGCATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggaccctttttaaattattatgggaactttcttcttttcaaatgcgatatagGGTGCTCACAGTGACGAGCTTGCTGCTGCTTCAAGGCTGGAAGATAGCATCAACTTTTATCAAACTTCGATTCCTGATGTTGCTAAGCTTTTCCATATCG
         tttttaaattattat  TA-rich tract