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gttgcttccatttttatctctgttttcattaggctaggtggtgacaactgacaacattgattttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATACTGCACCGTGACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGG
species | Zea mays |
transcript | GRMZM2G033515_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAG CTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATAEST: gi|31353696|gb|CD438053.1|CD438053
genomic: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAGgttgcttcca ... tttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATA
EST: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAG CTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATAEST: gi|29130361|gb|CB381065.1|CB381065
genomic: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAGgttgcttcca ... tttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATA
EST: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAG CTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATAEST: gi|84980627|gb|DW530976.1|DW530976
genomic: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAGgttgcttcca ... tttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATA
EST: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAG CTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATAEST: gi|61119247|gb|DN560208.1|DN560208
genomic: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAGgttgcttcca ... tttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATA
EST: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAG CTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATAEST: gi|78092177|gb|DV520551.1|DV520551
genomic: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAGgttgcttcca ... tttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATA
EST: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAG CTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATAEST: gi|211356165|gb|FL188392.1|FL188392
genomic: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAGgttgcttcca ... tttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATA
EST: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAG CTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATAEST: gi|211356162|gb|FL188389.1|FL188389
genomic: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAGgttgcttcca ... tttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATA
EST: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAG CTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATA
genomic: GTGATGAGATGACCAGAGTATTCTGGCAGTCTATCAAGGACAAGgttgcttcca ... tttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATA
tctctgttttcattaggctaggtggtgacaactgacaacattgattttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATACTGCACCGTGACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGG
ttttttttc CT-rich tract
aacattgatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcttccatttttatctctgttttcattaggctaggtggtgacaactgacaacattgattttttttcagCTTATCTTTCCATTTCTGGACCTGGACATCAAGTACTATGACTTGGGGATACTGCACCGTGACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG