1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttcagatctaaattccatttcatccatgatagtttgtttcttcttaactcctgataaaaacgaaagaggctatgttaacttttatgtttcattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
species | Zea mays |
transcript | GRMZM2G033413_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAG GTTGAAATGCTAAAGAAGCAAAAGGATGAGEST: gi|211173685|gb|FL443064.1|FL443064
genomic: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAGgtataattgc ... cattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
EST: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAG GTTGAAATGCTAAAGAAGCAAAAGGATGAGEST: gi|211370614|gb|FL465519.1|FL465519
genomic: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAGgtataattgc ... cattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
EST: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAKTTGCAGAAAAAGCAG GTTGAAATGCTAAAGAAGCAAAAGGATGAGEST: gi|67031968|gb|CO460717.1|CO460717
genomic: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAGgtataattgc ... cattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
EST: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAG GTTGAAATGCTAAAGAAGCAAAAGGATGAGEST: gi|60401364|gb|DN234171.1|DN234171
genomic: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAGgtataattgc ... cattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
EST: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAG GTTGAAATGCTAAAGAAGCAAAAGGATGAGEST: gi|60340442|gb|DN207415.1|DN207415
genomic: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAGgtataattgc ... cattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
EST: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAG GTTGAAATGCTAAAGAAGCAAAAGGATGAGEST: gi|60398155|gb|DN230971.1|DN230971
genomic: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAGgtataattgc ... cattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
EST: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAG GTTGAAATGCTAAAGAAGCAAAAGGATGAGEST: gi|67033384|gb|CO462133.1|CO462133
genomic: CTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAGgtataattgc ... cattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
EST: CAAAACTCAATGACCAGAATGAGGAGTTGCAGAAAAAGCAG GTTGAAATGCTAAAGAAGCAAAAGGATGAG
genomic: CAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAGgtataattgc ... cattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
taactcctgataaaaacgaaagaggctatgttaacttttatgtttcattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
tgttaac putative branch site (score: 62)
tttcatt putative PPT
tatgttaacttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcagatctaaattccatttcatccatgatagtttgtttcttcttaactcctgataaaaacgaaagaggctatgttaacttttatgtttcattgtgcagGTTGAAATGCTAAAGAAGCAAAAGGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - atccatg
- - - - - - - - - - - - - - - - - - - - - - - -actcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt