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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagattaggcagtcttaagtttgcactgcagtataagtttgtgtcatttacataatatttaactgctgctcataaatatttcctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG

Basic information

species Zea mays
transcript GRMZM2G032564_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G49340.1 (Glycine max), 3'ss of exon 2
tcagattaggcagtcttaagtttgcactgcagtataagtttgtgtcatttacataatatttaactgctgc--tcataaatatttcctatgcttcaatt-----gcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
           ||| || | ||  |       |  || |      ||  ||   |  |   || |||       || |  |||| ||   | | | ||     ||||||||||||| | ||||||||||| ||||||||||| || ||| | |||||||||||||| || |||||  | ||||| |||||| | || ||    || |
-------cataagtgtttaattaacctgtttatccaaatacaccccaagtagtgatgagcaaaatgccataactatcatgattttctgatcctgacttactctgcagATTCCACACTTAAGACCTGCTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCAGGACCGTAAACCGAGCCTATGGAGGTGTTTTATCCGGGGGAGCTG

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G37360.1 (Glycine max), 3'ss of exon 2
tcagattaggcagtcttaagtttgcactgcagtataagtttgtgtcatttacataatatttaactgctgctcataaatattt--cctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
    |||| |  || |||       ||  |  ||     |  ||    ||    |||||        |  |||| | | |||   |    ||| |  |||||||||||||| ||||||||||||| ||||||||||| || ||| |  ||||||||||||| || |||||  | || || |||||| | || ||    || |
-ttaattaagttgt-ttatccaaatacatccctaagtagtgatgagcattgagcaatatgccttgtattatcatgattttttgatcctgacttaatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGCAGGACCGTAAACCGAGCCTACGGAGGTGTTTTATCAGGAGGAGCTG

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G11920.1 (Glycine max), 3'ss of exon 2
tcagattaggcagtcttaagtttgcactgcagta--taagtttgtgtcatttacataatatttaactgctgctcataaatattt-cctatgctt--caattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
 |||||       | ||   |||   |    |    || ||||      |||  |||| ||| |  |     |   || || |    |||||||  |||||||||||||||||| |||| ||||| ||||||||||| || |||||  | || ||||| |||||||| |||||| ||||||| || ||| ||||||| |  || |
-cagat---atttttttggctttatgcgagggacattatgtttcctgtgtttggataaaatt-atatatctttttcaactactaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGATCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGCGGAGTTTTGTCTGGAAGTGCTG

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
tcagattaggcagtcttaagtttgcactgcagta---taagtttgtgtcatttacataatatttaactgctgctcataaatatttcctatgctt--caattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
       ||    | ||  | ||    ||  | |   || ||||      |||  |||| |||  |   ||  |   || | |    |||||||  |||||||||||||||||| |||| ||||| |||||||||||||| |||||  | || ||||| |||||||| |||||| |||||||||| ||| | ||||| |  || |
-----ccagatgtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G41280.1 (Glycine max), 3'ss of exon 2
tcagattaggcagtcttaagtttgcactgcagtataagtttgtg-tcatttacataatatttaactgctgctcataaatatttcctatgctt--caattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
  || ||       ||  | ||| |  |  |  ||  ||    | | || ||   |||  |  || |     |||||   ||    ||||||  |||||||||||||||||  | || ||  | || || ||||| || |||||  | |  ||||| ||||||||||||||| |||||||||||||  ||||||| |  || |
--aggttcctacaactagatttttctttctatgattggtaaaggattatgtatg-aatgatacacggtataacataatggttattaatgcttggcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 2
-tcagattaggcagtcttaagtttgcac-tgcagtataagtttgtgtcatttacataatatttaactgctgctcataaatatttcctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
 |      |   ||| ||   |||  |  | | ||| | | || ||| | | | || ||   |      |  | ||   ||||   |  |    ||||||||||||||||  | || || || ||||| || || || |||||    || ||||| ||||||||||||||| |||||||||||||  ||||||| |  || |
gttcctacaactagttttttctttctatgtacggtaaaggattatgtaagtga-atgatgcatggtatatcataatggttattaa-tgagtggaaattgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G28900.1 (Arabidopsis thaliana), 3'ss of exon 2
tcagattaggca-gtcttaagtttgcactgcagtataagtttgtgtcatttacataatatttaactgctgctcataaa---tatttcctatgcttcaatt--gcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
     |||  ||  |  | | | |  |  | |    ||       |   ||   |   |||    || |  || |||    || || ||||| ||   ||  ||||||||| ||  ||||||||||||||||||| ||||| |||||||||||||||   ||||| ||||| ||| |||||||||||||||| |||||    || |
-----ttactcatatgcttaatctcaatagaacctcaaaaacacattcctttttttgaattagcatggt-ttcttaagctttactttctatgtttgttttctgcagATTCCGCATTTGAGACCTGCTGAGTACAAAAGGTCAAGGTTGGCAAGGAACGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGCTG

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
----tcagattaggcagtcttaagtttgcactgcagtataagtttgtgtcatttacataatatttaactgctgctcataaatatttcctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
     |||| |   ||  |||  |||| |     | || ||   | | |  |      | | | | | |  |  || |  | | ||| | || |  |  |||||||||| ||||||||||||||||| ||||||||||| || ||| |||||||||| ||||||||||||||  | ||||| |||||| |||| |||   || |
gtggccagagttttca--cttgtgtttacttgtgattagaaccatatattctgcttcaattgtgtcaatttt-ttcttttacaattctt-tgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
tcagattaggcagtctta-agtttgcactgcagtataagtttgtgtcatttacataatatttaactgctgctcataa----atatttcctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
    | |   || | | | ||  |  | || || | || || || |  | ||| ||| |||| | |||   |    |    |||     |  |||     |||||||||| ||||| |||||||| || ||||||||||| || ||  | |||||||| ||||||||||||||| | ||||| |||||  |||||||    || |
----actgcacattttgatagcatttattgtagcacaatttggt-ttgtatacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60394221|gb|DN227091.1|DN227091
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|31612238|gb|CD568860.1|CD568860
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|31909205|gb|CD650802.1|CD650802
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211530948|gb|FL194461.1|FL194461
EST:     AGCGCGCGA--SSACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211530949|gb|FL194462.1|FL194462
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|6031638|gb|AI668539.2|AI668539
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211336153|gb|FL024907.1|FL024907
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|40337269|gb|CK371339.1|CK371339
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|9952149|gb|BE638732.1|BE638732
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|15589577|gb|BI674193.1|BI674193
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGCCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211336147|gb|FL024901.1|FL024901
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|60396487|gb|DN229356.1|DN229356
EST:     AATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211093531|gb|FL210138.1|FL210138
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|60399809|gb|DN232619.1|DN232619
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|13558941|gb|BG550296.1|BG550296
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211440905|gb|FL024919.1|FL024919
EST:     AGCGCGCGA-SSSACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211440896|gb|FL024910.1|FL024910
EST:     AGCGCGCGAN-GTACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|28910208|gb|CB331322.1|CB331322
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|31250297|gb|CD219321.1|CD219321
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|5398743|gb|AI812208.1|AI812208
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211440908|gb|FL024922.1|FL024922
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCTAGGTTGCCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|60352744|gb|DN219717.1|DN219717
EST:     GGGATGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: GGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|5124370|gb|AI746106.1|AI746106
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|31909207|gb|CD650803.1|CD650803
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|14548381|gb|BI096725.1|BI096725
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCTAGGTTGCCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|5439254|gb|AI820175.1|AI820175
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|60397292|gb|DN230108.1|DN230108
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211440906|gb|FL024920.1|FL024920
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCTAGGTTGCCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|16378357|gb|BI992402.1|BI992402
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211440895|gb|FL024909.1|FL024909
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|40336063|gb|CK370133.1|CK370133
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGACACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|45846863|gb|CN070806.1|CN070806
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGCCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211443031|gb|FL024931.1|FL024931
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCTAGGTTGCCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|60342507|gb|DN209480.1|DN209480
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|28568995|gb|CB280870.1|CB280870
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211443025|gb|FL024925.1|FL024925
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211440894|gb|FL024908.1|FL024908
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCA
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCA
EST: gi|211530950|gb|FL194463.1|FL194463
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|78027039|gb|DV495426.1|DV495426
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211443023|gb|FL024923.1|FL024923
EST:     AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAATGCCCGGTCACCGGGAAGAAGATCCAAGGAgtatgagcct ... tcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttacataatatttaactgctgctcataaatatttcctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG
            atttaac  putative branch site (score: 3)
     acataatatttaact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcagattaggcagtcttaagtttgcactgcagtataagtttgtgtcatttacataatatttaactgctgctcataaatatttcctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG