1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atcaatagttatctagaagatcatatttaccggttggttagacaagttccatttttctgtgtgtctcagttgtgtctaacatcatcatcatgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTGGATTGAGAGCATTGGCGCTTCTTGGAGTTGGTGCCTCCGGTCTTTTGA
species | Zea mays |
transcript | GRMZM2G032367_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTG---GT ---CCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|149089338|gb|EE178570.2|EE178570
genomic: GCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTGTAAGTgttttggtga ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: GCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTG---GT ---CCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|60359707|gb|DN226680.1|DN226680
genomic: GCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTGTAAGTgttttggtga ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: GCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTG---GT ---CCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTEST: gi|78108501|gb|DV526919.1|DV526919
genomic: GCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTGTAAGTgttttggtga ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
EST: GCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTG---GT ---CCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
genomic: GCATTAACCAGCTTCTGAAGAGAATTCTCCACAACCAGTCCGCTGTAAGTgttttggtga ... tgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCT
gttccatttttctgtgtgtctcagttgtgtctaacatcatcatcatgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTGGATTGAGAGCATTGGCGCTTCTTGGAGTTGGTGCCTCCGGTCTTTTGA
gtctaac putative branch site (score: 2)
tcttc putative PPT
atttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaatagttatctagaagatcatatttaccggttggttagacaagttccatttttctgtgtgtctcagttgtgtctaacatcatcatcatgatcttcagGGTCCATGGCTGCTTTCTTCATTTCGGGGAAATCATGAAGAGTCCTCTGCTGGATTGAGAGCATTGGCGCTTCTTGGAGTTGGTGCCTCCGGTCTTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG