1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcgtccttctccctcgccgccggctcttttaaatctccccgcttattctttttgagcgggtgaggagatgcgtgattgttcctcttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCTACTGGCCGGCCCTCTTCGCCAAGCTCCTGGAGAAGCGCAACGTCGAGG
species | Zea mays |
transcript | GRMZM2G032315_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|14701520|gb|BI233938.1|BI233938
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|14701524|gb|BI233942.1|BI233942
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|211369671|gb|FK974181.1|FK974181
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCAACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCEST: gi|84980713|gb|DW531062.1|DW531062
genomic: CTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCA-CCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|19822304|gb|BQ048328.1|BQ048328
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|14529509|gb|BI096642.1|BI096642
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|211349249|gb|FK973355.1|FK973355
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|15198760|gb|BI423468.1|BI423468
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CTGCACCTACGNCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|29543928|gb|CB604308.1|CB604308
genomic: CTGCACCTACG-CCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|211232580|gb|FK974101.1|FK974101
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|37394086|gb|CF634313.1|CF634313
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|15177496|gb|BI398435.1|BI398435
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|211369677|gb|FK974187.1|FK974187
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCAEST: gi|211232579|gb|FK974100.1|FK974100
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCA
EST: CCTGCACCTACGCCGCTCTCATCCTCAGNGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCEST: gi|211369682|gb|FK974192.1|FK974192
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
EST: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACC GCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
genomic: CCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGGCATCGCCATCACCgtgcgtcctt ... ttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCC
cgcttattctttttgagcgggtgaggagatgcgtgattgttcctcttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCTACTGGCCGGCCCTCTTCGCCAAGCTCCTGGAGAAGCGCAACGTCGAGG
ttgttcctcttctt CT-rich tract
attcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtccttctccctcgccgccggctcttttaaatctccccgcttattctttttgagcgggtgaggagatgcgtgattgttcctcttcttggcagGCCGAGAAGATCGCCACGATCGTGAAGGCGGCCAACATCAAGGTCGAGTCCTACTGGCCGGCCCTCTTCGCCAAGCTCCTGGAGAAGCGCAACGTCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC