1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaatgttactgatgttgataagctgtgatgcttgctggattcactgtagcatttatgctataatcttctgatgtttccttcccctgtcactgcaatgcagGTCCCATTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCAGAGGTCAAGAAAACTGAGGTGCTGATGGAAAATTTCCGTAGAGCTATAGGTTTGCGTA
species | Zea mays |
transcript | GRMZM2G032267_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGGCAAAACGGCGCTAGCGCTCGGCATAGCGCAGGAGCTCGGCAGCAAG GTCCCATTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCAGAGGTCAAGEST: gi|8102878|gb|AW927556.1|AW927556
genomic: CGGGCAAAACGGCGCTAGCGCTCGGCATAGCGCAGGAGCTCGGCAGCAAGgtccgtgcgc ... tgcaatgcagGTCCCATTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCAGAGGTCAAG
EST: CGGGCAAAACGGCGCTAGCGCTCGGCATATTGCAGGAGCTCGGCAGCAAG GTCCCATTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCAGAGGTCAAGEST: gi|78103432|gb|DV521860.1|DV521860
genomic: CGGGCAAAACGGCGCTAGCGCTCGGCATAGCGCAGGAGCTCGGCAGCAAGgtccgtgcgc ... tgcaatgcagGTCCCATTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCAGAGGTCAAG
EST: CGCAGGAGCTCGGCAGCAAG GTCCCATTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCAGAGGTCAAG
genomic: CGCAGGAGCTCGGCAGCAAGgtccgtgcgc ... tgcaatgcagGTCCCATTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCAGAGGTCAAG
gtagcatttatgctataatcttctgatgtttccttcccctgtcactgcaatgcagGTCCCATTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCAGAGGTCAAGAAAACTGAGGTGCTGATGGAAAATTTCCGTAGAGCTATAGGTTTGCGTA
ttctgat putative branch site (score: 93)
tttccttcccctgtca CT-rich tract
atttatgctataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgttactgatgttgataagctgtgatgcttgctggattcactgtagcatttatgctataatcttctgatgtttccttcccctgtcactgcaatgcagGTCCCATTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCAGAGGTCAAGAAAACTGAGGTGCTGATGGAAAATTTCCGTAGAGCTATAGGTTTGCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT