1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acatcgtttaaacgtagttttaataacactgattccaaggttgtttcagttcatttgcctgttggttgtttcattgaccaaacaaacctttttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGACTCAGTGGATAGCCAGGAAAAGATAGCTTCGCTACATACCACATTTGACA
species | Zea mays |
transcript | GRMZM2G032209_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAAGGGCATGATCTCAGAAGACTCATCGAATTTTAACAAGTCATTTGAG GAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGACEST: gi|6828041|gb|AW331684.1|AW331684
genomic: AAAAGGGCATGATCTCAGAAGACTCATCGAATTTTAACAAGTCATTTGAGgtacctgatt ... tttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGAC
EST: AAAAGGGCATGATCTCAGAAGACTCATCGTATTTTAACAAGTCATTTGAG GAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGACEST: gi|78021765|gb|DV490152.1|DV490152
genomic: AAAAGGGCATGATCTCAGAAGACTCATCGAATTTTAACAAGTCATTTGAGgtacctgatt ... tttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGAC
EST: AAAAGGGCATGATCTCAGAAGACTCATCGTATTTTAACAAGTCATTTGAG GAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGACEST: gi|32931449|gb|CF036261.1|CF036261
genomic: AAAAGGGCATGATCTCAGAAGACTCATCGAATTTTAACAAGTCATTTGAGgtacctgatt ... tttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGAC
EST: AAAAGGGCATGATCTCAGAAGACTCATCGAATTTTAACAAGTCATTTGAG GAAGATAGTCCTGTCTTATTTATTGATAAATACAAACTCGACGAAGTAGACEST: gi|5706353|gb|AI942129.1|AI942129
genomic: AAAAGGGCATGATCTCAGAAGACTCATCGAATTTTAACAAGTCATTTGAGgtacctgatt ... tttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGAC
EST: AAGTCATTTGAG GAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGACEST: gi|211501177|gb|FL470502.1|FL470502
genomic: AAGTCATTTGAGgtacctgatt ... tttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGAC
EST: AAAAGGGCATGATCTCAGAAGACTCATCGTATTTTAACAAGTCATTNGAG GAAGATAGTCCTGTCTTA-TTATTGATAAAGACAAAATCGACGAAGTAGACEST: gi|4753369|gb|AI657274.1|AI657274
genomic: AAAAGGGCATGATCTCAGAAGACTCATCGAATTTTAACAAGTCATTTGAGgtacctgatt ... tttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGAC
EST: AAAAGGGCATGATCTCAGAAGACTCATCGAATTTTAACAAGTCATTTGAG GAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGAC
genomic: AAAAGGGCATGATCTCAGAAGACTCATCGAATTTTAACAAGTCATTTGAGgtacctgatt ... tttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGAC
tcagttcatttgcctgttggttgtttcattgaccaaacaaacctttttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGACTCAGTGGATAGCCAGGAAAAGATAGCTTCGCTACATACCACATTTGACA
cattgac putative branch site (score: 13)
cctttttcttgc putative PPT
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatcgtttaaacgtagttttaataacactgattccaaggttgtttcagttcatttgcctgttggttgtttcattgaccaaacaaacctttttcttgcagGAAGATAGTCCTGTCTTATTTATTGATAAAGACAAAATCGACGAAGTAGACTCAGTGGATAGCCAGGAAAAGATAGCTTCGCTACATACCACATTTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - -aataaca
- - - - - - - - - - - - - - ctgattc
- - - - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - -ttcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa