1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgaattccttgtgccatccatttttattccttgaatgtgattcggagccgcacattatttcattaaagatgtttgcactccccattatggtaggtgtaaccgttattcatgcagccattttctttgtgtttttcttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG
species | Zea mays |
transcript | GRMZM2G031802_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCATTTTGTCCACTGGATAA GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTEST: gi|5361053|gb|AI795668.1|AI795668
genomic: CCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTEST: gi|71425662|gb|DR806812.1|DR806812
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTEST: gi|211132529|gb|FL458973.1|FL458973
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTEST: gi|60356812|gb|DN223785.1|DN223785
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTEST: gi|71425663|gb|DR806813.1|DR806813
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
EST: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAA GTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
genomic: TAACTGGATTTACCGATACTTCACTGAGCCCCATTTTGTCCACTGGATAAgtatgaattc ... cttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTT
ggtaggtgtaaccgttattcatgcagccattttctttgtgtttttcttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG
tcttaac putative branch site (score: 2)
ccattttctttgtgtt CT-rich tract
tttttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaattccttgtgccatccatttttattccttgaatgtgattcggagccgcacattatttcattaaagatgtttgcactccccattatggtaggtgtaaccgttattcatgcagccattttctttgtgtttttcttaacccagGTTGGATGGCAGGAATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG