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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaggaattttgctttgcttgctacaatgttcttagctaataagtgcttcggcgttttggagaagttcaagctttactgatgtatgtatgctatgcttgtattcttcagTACCATTGGCCGTGCTGCTTTCACCGGAAATCATCAATGGATTGTCCATGATCCTGCCAATGATCACAATCTCAGACCCGAG

Basic information

species Zea mays
transcript GRMZM2G031656_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031656_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g06330.2 (Oryza sativa), 3'ss of exon 2
--------gtaagcaggaattttgctttgctt---gctacaatgttcttagct--aataagtgcttcggcg-ttttggagaagttcaagctttactgat-gtatgtatgctatgcttgt-attcttcagTACCATTGGCCGTGCTGCTTTCACCGGAAATCATCAATGGATTGTCCATGATCCTGCCAATGATCACAATCTCAGACCCGAG
           |  | ||   || ||||| ||   |    ||||   |||  |  | ||   |||   ||  | |||  |   |      || | | || | ||| || ||   |||||  | |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||  ||||||||||||||   |||||| |||||
gtaagcaaaagaatatgatcgtttctttggtttgagtattaatggggttaagtacagtattagctaatgcaatcttgttggtttattgttttcattaattggatggattcttcacttgttgtccttcagTACCATTGGCCGTGCTGCATTCACTGGGAATCATCAATGGATTGTCCATGAAACTGCCAATGATCACGGGCTCAGATCCGAG

upper sequence: GRMZM2G031656_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g06330.1 (Oryza sativa), 3'ss of exon 2
--------gtaagcaggaattttgctttgctt---gctacaatgttcttagcta--ataagtgcttcggcg-ttttggagaagttcaagctttactgat-gtatgtatgctatgcttgt-attcttcagTACCATTGGCCGTGCTGCTTTCACCGGAAATCATCAATGGATTGTCCATGATCCTGCCAATGATCACAATCTCAGACCCGAG---
           |  | ||   || ||||| ||   |    ||||   |||  ||   ||   |||   ||  | |||  |   |      || | | || | ||| || ||   |||||  | |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||  ||||||||||||||   |||||| |||||   
gtaagcaaaagaatatgatcgtttctttggtttgagtattaatggggttaagtacagtattagctaatgcaatcttgttggtttattgttttcattaattggatggattcttcacttgttgtccttcagTACCATTGGCCGTGCTGCATTCACTGGGAATCATCAATGGATTGTCCATGAAACTGCCAATGATCACGGGCTCAGATCCGAGGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50337716|gb|CO532842.1|CO532842
EST:     ACGCTTGTTAGGAAGGTCATGACCTCGCAAATTCATGTTGTTGGTGAGGG                         TACCATTGGCCGTGCTGCTTTCACCGGAAATCATCAATGGATTGTCCATGA
genomic: ACGCTTGTTAGGAAGGTCATGACCTCGCAAATTCATGTTGTTGGTGAGGGgtaagcagga ... tattcttcagTACCATTGGCCGTGCTGCTTTCACCGGAAATCATCAATGGATTGTCCATGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggagaagttcaagctttactgatgtatgtatgctatgcttgtattcttcagTACCATTGGCCGTGCTGCTTTCACCGGAAATCATCAATGGATTGTCCATGATCCTGCCAATGATCACAATCTCAGACCCGAG
                    tactgat  putative branch site (score: 2)
                                             tattcttc  putative PPT
                            tatgtat  TA-rich tract