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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatcattgaccctgaaccaaacaaccttatttgagtgatcgtcccgtcttgtcattgcaaccaaacacatcctaatttgcatgttttttccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG

Basic information

species Zea mays
transcript GRMZM2G031625_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211313582|gb|FL415815.1|FL415815
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211112897|gb|FL386070.1|FL386070
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211305688|gb|FL424514.1|FL424514
EST:     GCGCGTGGGTGCYGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211315265|gb|FL392917.1|FL392917
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211341305|gb|FL394251.1|FL394251
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211447311|gb|FL370712.1|FL370712
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211439708|gb|FL416905.1|FL416905
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|78179236|gb|DV549609.1|DV549609
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211529790|gb|FL373531.1|FL373531
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211212468|gb|FL408351.1|FL408351
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211029397|gb|FL376211.1|FL376211
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|78026767|gb|DV495154.1|DV495154
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211214751|gb|FL397478.1|FL397478
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211042824|gb|FL411663.1|FL411663
EST:     GCGCGTGGGTG-CGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211341415|gb|FL403599.1|FL403599
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211030484|gb|FL428665.1|FL428665
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211154631|gb|FL370441.1|FL370441
EST:     CGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGASC--TNCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: CGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGT-CGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211451638|gb|FL374390.1|FL374390
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|16918950|gb|BM073966.1|BM073966
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211364209|gb|FL423704.1|FL423704
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211216825|gb|FL370061.1|FL370061
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCGGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211364309|gb|FL429334.1|FL429334
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211147223|gb|FL386485.1|FL386485
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211392704|gb|FL395243.1|FL395243
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211221220|gb|FL370906.1|FL370906
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211298864|gb|FL392435.1|FL392435
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211334456|gb|FL398399.1|FL398399
EST:     GCGCGTGGGTGCCGGAGTTGMGATCGGTGGCGCGGTCGACGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|12046372|gb|BF728511.1|BF728511
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|18163806|gb|BM333645.1|BM333645
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAATTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211526934|gb|FL381038.1|FL381038
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211418661|gb|FL411178.1|FL411178
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211022661|gb|FL411191.1|FL411191
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211099727|gb|FL381200.1|FL381200
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211397968|gb|FL395725.1|FL395725
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211259828|gb|FL427119.1|FL427119
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|18170008|gb|BM339848.1|BM339848
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAATTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211346062|gb|FL392061.1|FL392061
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|18162918|gb|BM332757.1|BM332757
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAATTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211194230|gb|FL384759.1|FL384759
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211259829|gb|FL427120.1|FL427120
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211128586|gb|FL429558.1|FL429558
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|113701038|gb|EE678542.1|EE678542
EST:     GCGCGTGTGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211482043|gb|FL394362.1|FL394362
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211439139|gb|FL388410.1|FL388410
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|5058599|gb|AI737075.1|AI737075
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211206901|gb|FL385654.1|FL385654
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
EST: gi|211101077|gb|FL442473.1|FL442473
EST:     GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCG                         GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
genomic: GCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 91

GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG


Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 67

GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG


Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 75

GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG


Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 68

GATTAGAGAAGGTGATGGCGAGGAGTGACAGCTGCCTGGCGCGCGTGGGTGCCGGAGTTGCGATCGGTGGCGCGGTCGGCGGAGCCGTCGgtaactttcc ... ccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcttgtcattgcaaccaaacacatcctaatttgcatgttttttccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG
                         tcctaat  putative branch site (score: 68)
                                   catgttttttccctct  putative PPT
                                    atgtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caatcattgaccctgaaccaaacaaccttatttgagtgatcgtcccgtcttgtcattgcaaccaaacacatcctaatttgcatgttttttccctctgcagGTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG

- - - - - ccctgaa
- - - - - - - - - - aacaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt