1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtattaattgttttcaacattttttctccttggtgccgtggtatcagtttggtgaattgtctgcactagattgaatgggacagtgatgagtttggattaggaatatctgtaccttacatctgtcttcatggtatttggcagGTTGCCCGAAAAATTGGTGACCCTGATGCTCCTCGCCCTTGGAGCCGCCATTCTTTAAAGAAGTCTGAATATGGTAGTAAAGACAAGAATAATGCTGGAG
species | Zea mays |
transcript | GRMZM2G031529_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAAGTATTTCAACAATACATACATCGACACTTGTAAGATCACCTGCGAG GTTGCCCGAAAAATTGGTGACCCTGATGCTCCTCGCCCTTGGAGCCGCCATEST: gi|32908510|gb|CF013323.1|CF013323
genomic: TCAAGTATTTCAACAATACATACATCGACACTTGTAAGATCACCTGCGAGgtattaattg ... tatttggcagGTTGCCCGAAAAATTGGTGACCCTGATGCTCCTCGCCCTTGGAGCCGCCAT
EST: TCAAGTATTTCAACAATACATACATCGACACTTGTAAGATCACCTGCGAG GTTGCCCGAAAAATTGGTGACCCTGATGCTCCTCGCCCTTGGAGCCGCCATEST: gi|89248327|gb|DY620113.1|DY620113
genomic: TCAAGTATTTCAACAATACATACATCGACACTTGTAAGATCACCTGCGAGgtattaattg ... tatttggcagGTTGCCCGAAAAATTGGTGACCCTGATGCTCCTCGCCCTTGGAGCCGCCAT
EST: TCAAGTATTTCAACAATACATACATCGACACTTGTAAGATCACCTGCGAG GTTGCCCGAAAAATTGGTGACCCTGATGCTCCTCGCCCTTGGAGCCGCCAT
genomic: TCAAGTATTTCAACAATACATACATCGACACTTGTAAGATCACCTGCGAGgtattaattg ... tatttggcagGTTGCCCGAAAAATTGGTGACCCTGATGCTCCTCGCCCTTGGAGCCGCCAT
tgagtttggattaggaatatctgtaccttacatctgtcttcatggtatttggcagGTTGCCCGAAAAATTGGTGACCCTGATGCTCCTCGCCCTTGGAGCCGCCATTCTTTAAAGAAGTCTGAATATGGTAGTAAAGACAAGAATAATGCTGGAG
accttac putative branch site (score: 29)
aatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaattgttttcaacattttttctccttggtgccgtggtatcagtttggtgaattgtctgcactagattgaatgggacagtgatgagtttggattaggaatatctgtaccttacatctgtcttcatggtatttggcagGTTGCCCGAAAAATTGGTGACCCTGATGCTCCTCGCCCTTGGAGCCGCCATTCTTTAAAGAAGTCTGAATATGGTAGTAAAGACAAGAATAATGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA