1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aactgctggtcaaggatacataactcgtgattcaatgtgaatttgcaggtaaagtttcattctgaggtgtctaacatactgatactgattccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGATGACAATGGCAGCAACACTGTGGAGCATGTGTCTCTCCAGTCATCACTA
species | Zea mays |
transcript | GRMZM2G031461_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG ATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGAEST: gi|211540003|gb|FK966945.1|FK966945
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGA
EST: TTCGTGGAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG ATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGAEST: gi|211540006|gb|FK966948.1|FK966948
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGA
EST: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG ATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGAEST: gi|211543010|gb|FK966953.1|FK966953
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGA
EST: TTCGTGGAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG ATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGAEST: gi|78112940|gb|DV531334.1|DV531334
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGA
EST: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG ATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGAEST: gi|211540007|gb|FK966949.1|FK966949
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGA
EST: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG ATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGAEST: gi|211540005|gb|FK966947.1|FK966947
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGA
EST: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG GEST: gi|211540005|gb|FK966947.1|FK966947
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcag-
EST: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG GEST: gi|40335290|gb|CK369360.1|CK369360
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcag-
EST: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG ATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGAEST: gi|211543013|gb|FK966956.1|FK966956
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGA
EST: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGG ATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGA
genomic: TTCGTGAAGTTCTCTGTGGAGGATCAGGTCGTGGGGTACATCCACAAGGGgtgagtggga ... ccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGA
caggtaaagtttcattctgaggtgtctaacatactgatactgattccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGATGACAATGGCAGCAACACTGTGGAGCATGTGTCTCTCCAGTCATCACTA
tactgat putative branch site (score: 46)
aaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgctggtcaaggatacataactcgtgattcaatgtgaatttgcaggtaaagtttcattctgaggtgtctaacatactgatactgattccaatttcagATTTATCGAACACATCAGAGACTTTCATGATGTTTTTACCATTGTCATGGATGACAATGGCAGCAACACTGTGGAGCATGTGTCTCTCCAGTCATCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
-actgctg
- - - - - - - - - - - - - -tgattca
- - - - - - - - - - - - - - - - - - - - - -tgcaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgatt