1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagtagggaggtagcaagcaagatattattatgacaccataccatatttggcaggttttacaacttgtgatctgaatgattatataattatacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT
species | Zea mays |
transcript | GRMZM2G031435_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAAEST: gi|71441815|gb|DR822865.1|DR822865
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAA
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|148970664|gb|EE021375.2|EE021375
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTEST: gi|93284231|gb|EB676495.1|EB676495
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTT
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|71448351|gb|DR829401.1|DR829401
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|71439137|gb|DR820187.1|DR820187
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|211118445|gb|FL049561.1|FL049561
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCAACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTAEST: gi|88746187|gb|DY530328.1|DY530328
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTA
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|71766612|gb|DR964549.1|DR964549
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|19057494|gb|BM736161.1|BM736161
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCAACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|78103952|gb|DV522370.1|DV522370
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|71430075|gb|DR811125.1|DR811125
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|76288945|gb|DV028513.1|DV028513
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|76280780|gb|DV020348.1|DV020348
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|87152319|gb|DY397108.1|DY397108
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCAACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|76928948|gb|DV171821.1|DV171821
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTEST: gi|74232090|gb|DT640004.1|DT640004
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGT
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|101383931|gb|EB814020.1|EB814020
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCEST: gi|22491044|gb|BU050967.1|BU050967
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
EST: TTACACTCAATGAACCCTATGAAACTCTGGTTCCAACATCCTTATACCAG GCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
genomic: TTACACTCAATGAACCCTATGAAACTCTGGTTCCGACATCCTTATACCAGgtagatgttc ... tacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCC
atttggcaggttttacaacttgtgatctgaatgattatataattatacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT
tacttttc CT-rich tract
atctgaatgattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtagggaggtagcaagcaagatattattatgacaccataccatatttggcaggttttacaacttgtgatctgaatgattatataattatacttttcagGCTCATGGAATCAATCATCTCAAAATTCCTACAAGAGACTACCTGTTTGCCCCATCCCTGGAGCATATTTGTCGTGCAGTGGATTTTATCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - ccatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatg