1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacttgagttaaattaaacattatttatttgttaggtgctgctaggttgctattgcgagttatgcttcttttatgggtttaagctttcagttgtcaccatgctatccggctatctgccttagattttgtttctgtcatcggcagataaaactattgaagatacttgctgtgcttggcagTGGTGATAAACAAGCAAGTGGACATATGTACACTGTATTGGGCGACATATTCAAGAAGGGTGACACTGCGAGCAACATTGGCAATGCTATACTGTATGAA
species | Zea mays |
transcript | GRMZM2G031352_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTTCCGACTTCCTACGATTATCACCAAATGCCTGCACCATTTATTCAG TGGTGATAAACAAGCAAGTGGACATATEST: gi|87151996|gb|DY396785.1|DY396785
genomic: GGCTTCCGACTTCCTACGATTATCACCAAATGCCTGCACCATTTATTCAGgtacttgagt ... tgcttggcagTGGTGATAAACAAGCAAGTGGACATAT
EST: GGCTTCCGACTTCCTACGATTATCACCAAATGCCTGCACCATTTATTCAG TGGTGATAAACAAGCAAGTGGACATATGTACACTGTATTGGGCGACATATTEST: gi|18385147|gb|BM418346.1|BM418346
genomic: GGCTTCCGACTTCCTACGATTATCACCAAATGCCTGCACCATTTATTCAGgtacttgagt ... tgcttggcagTGGTGATAAACAAGCAAGTGGACATATGTACACTGTATTGGGCGACATATT
EST: GGCTTCCGACTTCCTACGATTATCACCAAATGCCTGCACCATTTATTCAG TGGTGATAAACAAGCAAGTGGACATATGTACACTGTATTGGGCGACATATT
genomic: GGCTTCCGACTTCCTACGATTATCACCAAATGCCTGCACCATTTATTCAGgtacttgagt ... tgcttggcagTGGTGATAAACAAGCAAGTGGACATATGTACACTGTATTGGGCGACATATT
tttgtttctgtcatcggcagataaaactattgaagatacttgctgtgcttggcagTGGTGATAAACAAGCAAGTGGACATATGTACACTGTATTGGGCGACATATTCAAGAAGGGTGACACTGCGAGCAACATTGGCAATGCTATACTGTATGAA
ataaaactattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgagttaaattaaacattatttatttgttaggtgctgctaggttgctattgcgagttatgcttcttttatgggtttaagctttcagttgtcaccatgctatccggctatctgccttagattttgtttctgtcatcggcagataaaactattgaagatacttgctgtgcttggcagTGGTGATAAACAAGCAAGTGGACATATGTACACTGTATTGGGCGACATATTCAAGAAGGGTGACACTGCGAGCAACATTGGCAATGCTATACTGTATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG