1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttgaataggctgtagttttatattattacattttgaaaggagatatcattttgattctttgtgacaatttttttcccctcttgctcgtcttcctttcagTACAAACCGGAGTCATGTACCCTGCAAGCACACAAAGGAGACAAGATTAAGGTTCATTATCGT
species | Zea mays |
transcript | GRMZM2G031204_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCGGCCAAGAAGTCCAGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAACCGGAGTCATGTACCCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCAGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtgtctgctc ... ttcctttcagTACAAACCGGAGTCATGTACCCTGCAAGCACACAAAGGAGACAAGATTAAG
atcattttgattctttgtgacaatttttttcccctcttgctcgtcttcctttcagTACAAACCGGAGTCATGTACCCTGCAAGCACACAAAGGAGACAAGATTAAGGTTCATTATCGT
ttttgat putative branch site (score: 4)
caatttttttcccctc putative PPT
acaattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaataggctgtagttttatattattacattttgaaaggagatatcattttgattctttgtgacaatttttttcccctcttgctcgtcttcctttcagTACAAACCGGAGTCATGTACCCTGCAAGCACACAAAGGAGACAAGATTAAGGTTCATTATCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - -gctgtag
- - - - - - - - - - - - - -tacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - tgattct