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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacgcaccgtacgtagcttaattttcgctggtttcggatctgcgtgcgtgcatccatgcatgcatgatgatctaccgacgatgtgctggttttcagGTGTGAGCAAGGACGGGCTTGTTCGGCACTTCTTCCACCGGCCGTCCAGGGCGTACACGACGGGGACGAGGAAGCGGCGGAAGGTGCACAGCGGCGACGA

Basic information

species Zea mays
transcript GRMZM2G031200_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031200_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g48850.1 (Oryza sativa), 3'ss of exon 2
------gtacgtacgcaccgtacgtagcttaattt---tcgctggtttcggatc-----tgcgtgcgtgcatccatgcatgcat--gatgatctaccgacgatgtgctggtt--ttcagGTGTGAGCAAGGACGGGCTTGTTCGGCACTTCTTCCACCGGCCGTCCAGGGCGTACACGACGGGGACGAGGAAGCGGCGGAAGGTGCACAGCGGCGACGA
      |||  | |           ||   |||     ||| | | ||   ||      |   || ||  |||  ||| |||||  |  | | ||   |   |       ||  |||||||||||||||||||||||| ||  |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| | 
gtgggtgtaaattcttttttcttacagtggaatcagaatcggtagcttaaaattcttgataaatgagttgatcgttgcgtgcatttgtgggtgtaaataaatttgaaaaattaattcagGTGTGAGCAAGGACGGGCTGGTGAGGCACTTCTTCCACCGGCCGTCGAAGGCGTACACGACGGGGACGAGGAAGCGGCGGAAGGTGCACAGCGACGAGGT

upper sequence: GRMZM2G031200_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT1G28470.1 (Arabidopsis thaliana), 3'ss of exon 2
gtacgtacgcaccgtacgtagcttaattttcgctggtt---tcggatctgcgtgcgtgcatccatgcatgcatgatgatctaccgacgatgtgctggttttcagGTGTGAGCAAGGACGGGCTTGTTCGGCACTTCTTCCACCGGCCGTCCAGGGCGTACACGACGGGGACGAGGAAGCGGCGGAAGGTGCACAGCGGCGACGA
  ||  |      ||| |    | ||  |    |  |    || ||| ||  ||  ||     ||  |   ||| | | ||   |   || |  |       ||| || |||||||||||||  || |||||||||||||||||||| || | ||| || ||||| || ||  | || ||  | || |||  ||  |  || ||
--aca-atttggtgtaagattataaaagtgaaatcatcaaatccgatgtgattg-atgatcagatcaacatatgcttaacttaagtacatcttgtcccaagtagGAGTAAGCAAGGACGGGCAAGTACGGCACTTCTTCCACCGGCCATCAAAGGCTTATACGACCGGAACACGAAAACGAAGAAAAGTGAGCACAGATGAGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933474|gb|EC877174.2|EC877174
EST:     CATCGACGGCGAGAACGGCATCTGCTACACGCACCCGGAGAGGCTCCCCG                         GTGTGAGCAAGGACGGGCTTGTTCGGCACTTCTTCCACCGGCCGTCCAGGG
genomic: CATCGACGGCGAGAACGGCATCTGCTACACGCACCCGGAGAGGCTCCCCGgtacgtacgc ... tggttttcagGTGTGAGCAAGGACGGGCTTGTTCGGCACTTCTTCCACCGGCCGTCCAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtgcgtgcatccatgcatgcatgatgatctaccgacgatgtgctggttttcagGTGTGAGCAAGGACGGGCTTGTTCGGCACTTCTTCCACCGGCCGTCCAGGGCGTACACGACGGGGACGAGGAAGCGGCGGAAGGTGCACAGCGGCGACGA
                                                ttttc  CT-rich tract