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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtactcgctagcagcctagcaccgtcctttcactgtctcgctcccccgctaaggttccgcactgggccccgatctgaccgcgttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCTGGAGCGCCCCAACGCCGGCCTAGTTCTCAGCACCACCGCCCGCTTCTAC

Basic information

species Zea mays
transcript GRMZM2G030839_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030839_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g14830.1 (Oryza sativa), 3'ss of exon 1
gtcagtactcgctagcagcctagcaccgtcctttcactgtctcgctcccccgctaaggttccgcactgggccccgatctgaccgcgttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCTGGAGCGCCCCAACGCCGGCCTAGTTCTCAGCACCACCGCCCGCTTCTAC
|| ||| ||| |||   | ||   |  |  |||  |  || | |     | |  | || ||||  |||  |     |  || |||  ||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| || |||||||||| ||| |||||||||
gtgagtgctctctacttggcttcgattgggcttggaa-gtgtggg----cggagagggctccgatctgatcgt--gttcgatcgc--tgtggcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCGTCGCGGGAGGCTACCTCGTGCTGGAGCGGCCCAACGCCGGCCTCGTCCTCAGCACCAGCGCGCGCTTCTAC

upper sequence: GRMZM2G030839_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g48160.1 (Oryza sativa), 3'ss of exon 2
gtcagtactcgctagcagcctagcaccgtcctttcactgtctcgctcccccgctaaggttccgcactgggccccgatctgaccgcgttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCG-TGCTGGAGCGCCCCAACGCCGGCCTAGTTCTCAGCACCACCGCCCGCTTCTAC----------------------------------------------
                                                                                                                     |||||| |||||||||| | ||| | ||||||||||||||||||||||||| || |||| ||||||||| |||||||||                                              
---------------------------------------------------------------------------------------------------------------------gtgctcgtcgcgggaggtttcctagGTGCTGGAGCGCCCCAACGCCGGCCTCGTCCTCATCACCACCGCTCGCTTCTACGCCGTCGTCCTCCCGCCCCGCGACCAGCTCACCCACGACGAATCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgctcccccgctaaggttccgcactgggccccgatctgaccgcgttgtcgcagGGTGGCGTCGGCGCCGGGGAAGGTGCTCATCGCGGGAGGATACCTCGTGCTGGAGCGCCCCAACGCCGGCCTAGTTCTCAGCACCACCGCCCGCTTCTAC
                                   atctgac  putative branch site (score: 3)