1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagaactgccacgcgaacatctcgtgtcgatccagtcgactagcgccccgcgttcgaactaacctgcttcgtgccgtctcagAGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCGCGTCAGCCATGGCGGACGAGGAGCACCCGGAGAGGAGGGAGGAGGCCTC
species | Zea mays |
transcript | GRMZM2G030646_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCACCGACTCACCGTCGTCTCTYGCTCACTCGCTCGCNCTCTCCATCC AGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCGEST: gi|211410717|gb|FL390217.1|FL390217
genomic: CGTCACCGACTCACCGTCGTCTCTCGCTCACTCGCTCGCGCTCTCCATCCgtgagaactg ... gccgtctcagAGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG
EST: CGTCACCGACTCACCGTCGTCTCTYGCTCACTCGCTCGCGCTCTCCATCC AGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCGEST: gi|211471961|gb|FL417684.1|FL417684
genomic: CGTCACCGACTCACCGTCGTCTCTCGCTCACTCGCTCGCGCTCTCCATCCgtgagaactg ... gccgtctcagAGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG
EST: CGTCACCGACTCACCGTCGTCTCTYGCTCACTCGCTCGCGCTCTCCATCC AGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG
genomic: CGTCACCGACTCACCGTCGTCTCTCGCTCACTCGCTCGCGCTCTCCATCCgtgagaactg ... gccgtctcagAGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCG
cgatccagtcgactagcgccccgcgttcgaactaacctgcttcgtgccgtctcagAGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCGCGTCAGCCATGGCGGACGAGGAGCACCCGGAGAGGAGGGAGGAGGCCTC
aactaac putative branch site (score: 1)
ccgtctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaactgccacgcgaacatctcgtgtcgatccagtcgactagcgccccgcgttcgaactaacctgcttcgtgccgtctcagAGATCGGAGCGCTCGGTTCGGATAGGGGCGACTAGGAGGTGAAGGCGGGCGCGTCAGCCATGGCGGACGAGGAGCACCCGGAGAGGAGGGAGGAGGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG