1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttcataatgcatttctttcatacaccatgctgtaagagtagaattgatgattctttcatcgcattcaataatctcacaagattgtcttccattttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAATGGATGAACAGTAAAGAACCTGTTTATATATACATCAACTCAACTGGAA
species | Zea mays |
transcript | GRMZM2G030072_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCG TTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAAEST: gi|87157696|gb|DY402485.1|DY402485
genomic: ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctg ... attttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
EST: ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCG TTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAAEST: gi|9794785|gb|BE553093.1|BE553093
genomic: ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctg ... attttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
EST: TTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCG TTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAAEST: gi|26558842|gb|CA831077.1|CA831077
genomic: TTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctg ... attttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
EST: ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGCTTATATTGGCATGCCG TTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGCTGATGTACCTTGAA
genomic: ATTTGCCTTCATTGCTTCTTCACGGCCGAATCGTTTATATTGGCATGCCGgtataatctg ... attttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAA
gatgattctttcatcgcattcaataatctcacaagattgtcttccattttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAATGGATGAACAGTAAAGAACCTGTTTATATATACATCAACTCAACTGGAA
atctcac putative branch site (score: 3)
ttgtcttccattttc putative PPT
attcaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcataatgcatttctttcatacaccatgctgtaagagtagaattgatgattctttcatcgcattcaataatctcacaagattgtcttccattttcatagTTGGTACCAGCAGTGACTGAGCTCATTGTTGCCCAGTTGATGTACCTTGAATGGATGAACAGTAAAGAACCTGTTTATATATACATCAACTCAACTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC