Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttgtctttactagctgttcagatatcaagttttgtattcggcagtcggcacgtggagtatgcgcttgggattttgtagcacgattcatcaattatgtaccttacaatttaagagctctattatttctggtttcactatttttgaaatctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATCAGTGTGGACGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGA

Basic information

species Zea mays
transcript GRMZM2G029573_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g47850.3 (Oryza sativa), 3'ss of exon 2
-----gtgggttgtcttt--actagctgttcagatatcaagttttgtattcggcagtcggcacgtggagtatgcgcttgggattttgtagca------cgattcatcaattatgtaccttacaatttaagagctctattatttctggtttcactatttttgaaatctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATCAGTGTGGACGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGA
        ||||| ||||   ||||||| |  || |||  | | |   ||  |||||||   || ||| || | |||  || || ||   |       |||||   ||||| ||  ||  ||| || |  || |  || | | ||| |||||| ||||||| | ||| | ||||| | |||| || ||||||||||| |||||||| || || || || ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||
gtgagtcaggttgccttttcgctagctgattcga-atc--gctcta-gttttgcagtcgcagcgcggaatacgtgctcagggttctgctacggatttgcgattaggcaattgtgctcc--acagttaagaagatg-atgaatactg-tttcaccatttttggattcttcgtgcagTGCAAAGACCATGGAAGCTCAGCGATGCTCGGCTCGTTCTTGAGGATGGTTCAGTTTGGAAGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGA

upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G32190.1 (Glycine max), 3'ss of exon 1
gtgggttgtctttactagctgttcagatatcaagttttgtattcggcagtcggcacgtggagtatgcgcttgggattttgtagcacgattcatcaattatgtaccttacaatttaagagctctattatttctggtttcactatttttgaaatctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATCAGTGTGGACGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGA
                                      |||    | |  |    | |      |   |||    |   | | |||  |   |   || |    | |  |  || |      |  |   | |  |||   |  | ||||||| |       |  |||||||| |||||       |  ||| | ||| |  | |||||||||||| | ||||  || ||||| ||||||||||||||||| |||||      
--------------------------------------gtaactcgtaacccctgcttcttcccttttcttaaagt---gaaacacactctgtacttttt----catggagcttgaagaaattgatgcatttttttttttttgtattgaaatatagGCAATGGAGAAAGGCCTTGGAAAACTTCAGGCGCTAGACTTATGTTAGAAGATGGATCAATCTGGAAAGCAAAGTCATTTGGTGCTTCAGGAACCCAAGT------

upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv04s0044g00550.t01 (Vitis vinifera), 3'ss of exon 1
gtgggttgtctttactagctgttcagatatcaagttttgtattcggcagtcggcacgtggagtatgcgcttgggattttgtagcacgattcatcaattatgtaccttacaatttaagagctctattatttctggtttcactatttttgaaatctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATCAGTGTGGACGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGA
                                                        |   |   |    ||    |||     |     | |   ||||| |   |   ||  ||         ||     || |     | || |||||   |   |   |  ||||| || |||||       |||||| | ||||| || |||||||| ||||| |||| ||| ||||| ||||||||||||||||| |||||      
-------------------------------------------------------agatcaccttatttttcaattttcactccctttctaacgcattat-tgtttagaaacatacatatgtagtttgaattgatagtctttttgttgaaccttagGTTTGGGTGAAAGACCCTGGAAAACATCCGATGCTAGACTTGTTCTTGAAGATGGCTCAGTCTGGAAGGCAAAGTCATTTGGTGCTTCAGGAACTCAAGT------

upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ07419 (Selaginella moellendorffii), 3'ss of exon 1
gtgggttgtctttactagctgttcagatatcaagttttgtattcggcagtcggcacgtggagtatgcgcttgggattttgtagcacgattcatcaattatgtaccttacaatttaagagctctattatttctggtttcactatttttgaaatctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATCAGTGTGGACGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGA
                                                                ||    |||     ||| | | |     |||  |   | | |     |||     |  | | || |    | |      |||||           |||  ||  |||| ||||||   |  ||  |  | ||||| ||  | ||||||||||||||||  | |||||||||||| ||||| ||||| ||||| || ||
---------------------------------------------------------------gtgtcgctggcgcgctgt-gtatgtgatttcatcttcttgctt---gctttggatccattgtaatcttctttcttggctcttttg------tgggacagTTGAGCGGCCATGGAAGACTAAAGACACAAGGCTTGTTCTTCAGGATGGATCAGTGTGGAATGGCAAGTCTTTTGGAGCTTCTGGAACGCAAGTCGGAGA

upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ19894 (Selaginella moellendorffii), 3'ss of exon 1
gtgggttgtctttactagctgttcagatatcaagttttgtattcggcagtcggcacgtggagtatgcgcttgggattttgtagcacgattcatcaattatgtaccttacaatttaagagctctattatttctggtttcactat--ttttgaaatctccatg---cagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATCAGTGTGGACGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGA
                                                                                                          |   |||| |      |  |   | ||| | || |||  | |||     |   ||   |||  ||  |||| ||||||   |  ||  |  | ||||| ||  | ||||||||||||||||  | |||||||||||| ||||| ||||| ||||| || ||
-------------------------------------------------------------------------------------------------------gtatgtgatttcatcttcttgcttgctttggatccattataatcttggctcttttgtgggacagTTGAGCGGCCATGGAAGACTAAAGACACAAGGCTTGTTCTTCAGGATGGATCAGTGTGGAATGGCAAGTCTTTTGGAGCTTCTGGAACGCAAGTCGGAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211516234|gb|FL052551.1|FL052551
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211087675|gb|FL052572.1|FL052572
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211518598|gb|FL052566.1|FL052566
EST:     GTTKCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTTGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211516228|gb|FL052545.1|FL052545
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211516227|gb|FL052544.1|FL052544
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|148969434|gb|EE020234.2|EE020234
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211087674|gb|FL052571.1|FL052571
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAKGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211516229|gb|FL052546.1|FL052546
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|31361816|gb|CD446173.1|CD446173
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211516233|gb|FL052550.1|FL052550
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211087677|gb|FL052574.1|FL052574
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|89248122|gb|DY619908.1|DY619908
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211518588|gb|FL052556.1|FL052556
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211087672|gb|FL052569.1|FL052569
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211518587|gb|FL052555.1|FL052555
EST:     GTTGCCACTGGGCCTGCAGAGGGCCTGCGTTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACT-GGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211516232|gb|FL052549.1|FL052549
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211289807|gb|FL254557.1|FL254557
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211518594|gb|FL052562.1|FL052562
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211518589|gb|FL052557.1|FL052557
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|71764310|gb|DR962247.1|DR962247
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211087676|gb|FL052573.1|FL052573
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211087673|gb|FL052570.1|FL052570
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTTGTCCTGGAAGATGGA
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTC-TTGTCCTGGAAGATGGA
EST: gi|211516230|gb|FL052547.1|FL052547
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211287670|gb|FL254548.1|FL254548
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211518600|gb|FL052568.1|FL052568
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|31355937|gb|CD440294.1|CD440294
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211516235|gb|FL052552.1|FL052552
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211516231|gb|FL052548.1|FL052548
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211518596|gb|FL052564.1|FL052564
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211518597|gb|FL052565.1|FL052565
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211518593|gb|FL052561.1|FL052561
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
EST: gi|211287675|gb|FL254553.1|FL254553
EST:     GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAG                         CGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT
genomic: GTTGCCACTGGCCTGCAGAGGGCCTGCATTGCGGATGATGGAGgtgggttgtc ... ctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatttaagagctctattatttctggtttcactatttttgaaatctccatgcagCGGAAAGGCCGTGGAAGCTCAGTGATGCTCGTCTTGTCCTGGAAGATGGATCAGTGTGGACGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGA
 accttac  putative branch site (score: 3)
                                            tctccat  putative PPT
                               actatttttgaaat  TA-rich tract