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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttttttagtctgtcttcccgtctcttctgagggtaataacaaaggatcattgactaaatcatcgccaatgctctgctttggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC

Basic information

species Zea mays
transcript GRMZM2G029566_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029566_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g10310.2 (Oryza sativa), 3'ss of exon 2
gtgagttttttttagtctgtcttcccgtctcttctgagggtaataacaaaggatcattgactaaatcatcgccaatgctctgctttggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC
||||| ||  |  | |     ||    ||| |  |  | | || |    | || |||| |  ||||||    |  | ||||| |||    ||  |||| || | ||||||| |||| ||||||||||| ||||  ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||
gtgagcttgatcaactactcttt----tctttgttacgagaaacag--gatgaccatttatgaaatcactaac--ttctctgtttttatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211459280|gb|FL072386.1|FL072386
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211459281|gb|FL072387.1|FL072387
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211459279|gb|FL072385.1|FL072385
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataacaaaggatcattgactaaatcatcgccaatgctctgctttggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC
                    taaatcat  TA-rich tract