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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caacttatattattagtttttctgatatatatatgtttcagattgtgatatgttatgtgtcggtatgtagccatctgaccaaaccttctgcactgtgtagGTACTGCATGCTGGCAGTAGTAACAAAAATGCATTCAAAACACTAATTGCCGCGGATTACAGCGGCATCAAGGTTGAGTTGGTAAAAGACTTTCAAATGG

Basic information

species Zea mays
transcript GRMZM2G029559_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029559_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g12794.3 (Oryza sativa), 3'ss of exon 2
caacttata-ttattagttttt---ctgatatatatatgtttcagattgtgatatgttatgtgtcggtatgtagccatctgaccaaaccttctgcactgtgtagGTACTGCATGCTGGCAGTAGTAACAAAAATGCATTCAAAACACTAATTGCCGCGGATTACAGCGGCATCAAGGTTGAGTTGGTAAAAGACTTTCAAATGG
     |||  || ||  | | |    || |   | |   | |    || |  | | | |||  |  || |  | || | ||  ||    |||  |  ||  |||||| |||||||||||||| | ||||| |||||||||||  |||| ||||| || || |||   ||  |||||||||||||||| ||  ||||||| ||||
---tatatgcttcttgatctgtgaattggttcctctgcttgtatcgtttttgtttatcatgcttgtgtctccaaccttatgtacat-tattcgtctgtgattagGTATTGCATGCTGGCAGTGGAAACAAGAATGCATTCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGTGAAGAACTTTCAGATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211221751|gb|FL290080.1|FL290080
EST:     ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT                         GTACTGCATGCTGGCAGTAGTAACAAAAATGCATTCAAAACACTAATTGCC
genomic: ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTgtaagtgttt ... cactgtgtagGTACTGCATGCTGGCAGTAGTAACAAAAATGCATTCAAAACACTAATTGCC
EST: gi|211221752|gb|FL290081.1|FL290081
EST:     ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTT                         GTACTGCATGCTGGCAGTAGTAACAAAAATGCATTCAAAACACTAATTGCC
genomic: ATCTGAGATCGAGTGAAGCTAGCTTTTCATCGATATGGCGCTTgtaagtgttt ... cactgtgtagGTACTGCATGCTGGCAGTAGTAACAAAAATGCATTCAAAACACTAATTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatgttatgtgtcggtatgtagccatctgaccaaaccttctgcactgtgtagGTACTGCATGCTGGCAGTAGTAACAAAAATGCATTCAAAACACTAATTGCCGCGGATTACAGCGGCATCAAGGTTGAGTTGGTAAAAGACTTTCAAATGG
                           atctgac  putative branch site (score: 3)
                                      ccttctgc  putative PPT