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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttcaaacctctattagtatatacacgtttttttcatctctcctgcttttgcagtacttatttatagtccacaagcgatcatctttccaaagagtagtggttacgctaaaactttcctttgtactggttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCAACAATGATCAGTCAG

Basic information

species Zea mays
transcript GRMZM2G029543_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029543_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g18590.1 (Oryza sativa), 3'ss of exon 2
gtatcttcaaacctctattagtatatacacgttttt-ttcatctctcctgcttttgcagtacttatttatagtccacaagcgatcatctttccaaagagtagtggttacgct--aaaactttcctttgtactggttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCAACAATGATCAGTCAG
|||| ||| || || |  |  ||  || |||||||   || | |    | ||| | |  |  |  |    |||  ||   | ||     ||||||||   |      |   |  | |   |    ||||  ||   ||| ||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||
gtatgttctaatcttttattctacctatacgttttcactcctttacagtacttgttccatgatgctaataagtttacgtactata----ttccaaaggtgaaaaaaaagattgcatatgctaatgttgttttgacaaatgtagGTATGACTTGTTGGATTTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCGACAGTAATCAGTCAG

upper sequence: GRMZM2G029543_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv06s0004g07380.t01 (Vitis vinifera), 3'ss of exon 2
----------------gtatcttcaaacctctattagtatatac-acgtttttttcatctctcctg----cttttgcagtacttatttatagtccacaagcgatcatctttccaaagagtagtggttacgctaaaactttcctttgtactggttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCAACAATGATCAGTCAG
                 | | |||   | | |  |  | ||| | |  |  | |  | |||  |||    |  | |    | |    |||  |  |     | |  ||  |  | | ||  || |||    |  |         ||| ||| |  ||  |||| |||| | |||||| |||||| ||||||||||||||||||||| || || ||  |  | ||||||
gtagggtcaataatttttcttttcgttcttttgatgctttatgctatataatctaaacctcggctggggacaatagtgacaatgtgctattttggaagtatgtttttcaatttacacag-ggtagttg-atttgagtaacgtgatgttctgttgcatgcagATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTCTACTGTTTTAAGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149107016|gb|EE188912.2|EE188912
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211110285|gb|FL406914.1|FL406914
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCA
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCA
EST: gi|211093033|gb|FL191900.1|FL191900
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGAACAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211358098|gb|FL283155.1|FL283155
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|74238242|gb|DT646156.1|DT646156
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211358101|gb|FL283158.1|FL283158
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|50325147|gb|CO520273.1|CO520273
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|148981115|gb|EE027433.2|EE027433
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|6020995|gb|AW065923.1|AW065923
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAA-GAAATCCTTGG                         AT-TGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211358094|gb|FL283151.1|FL283151
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211360758|gb|FL283169.1|FL283169
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGANATCCTTGG                         ATATGAYTTGCTGGATCTTTTGCACCAATGGACCAA
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTT-GCACCAATGGACCAA
EST: gi|50332728|gb|CO527854.1|CO527854
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211360760|gb|FL283171.1|FL283171
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211410540|gb|FL395924.1|FL395924
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCWAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTCGCACCAATGGAC-AAAAGA
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGA
EST: gi|50327094|gb|CO522220.1|CO522220
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|31405538|gb|CD484270.1|CD484270
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|148978294|gb|EE026146.2|EE026146
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211360753|gb|FL283164.1|FL283164
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211358100|gb|FL283157.1|FL283157
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211358099|gb|FL283156.1|FL283156
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211360757|gb|FL283168.1|FL283168
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTAGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|71425519|gb|DR806724.1|DR806724
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|149084595|gb|EE174069.2|EE174069
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211358096|gb|FL283153.1|FL283153
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGGACCAAAAGAAAAGCTTGACT
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGG-ACCAAAAGAAAAGCTTGACT
EST: gi|211360754|gb|FL283165.1|FL283165
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211360756|gb|FL283167.1|FL283167
EST:     AGTGTTCCAGCAGCTACCACATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|149073767|gb|EE162081.2|EE162081
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|149042020|gb|EE046994.2|EE046994
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|149110774|gb|EE190602.2|EE190602
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|148934170|gb|EC878191.2|EC878191
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|149081210|gb|EE170319.2|EE170319
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211360759|gb|FL283170.1|FL283170
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|211014086|gb|FL389871.1|FL389871
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAA-GCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
EST: gi|67016630|gb|CO445379.1|CO445379
EST:     AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGG                         ATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC
genomic: AGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 256

GGTGCCCAAACCGTTGGAATGGGGGCAGAAGCTCAGAGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCAACAATGATCAGTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 398

GGTGCCCAAACCGTTGGAATGGGGGCAGAAGCTCAGAGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCAACAATGATCAGTCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 212

GGTGCCCAAACCGTTGGAATGGGGGCAGAAGCTCAGAGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCAACAATGATCAGTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 444

GGTGCCCAAACCGTTGGAATGGGGGCAGAAGCTCAGAGTGTTCCAGCAGCTACCAAATTGTTCAACCAGGCAAATGAAATCCTTGGgtatcttcaa ... gttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCAACAATGATCAGTCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttccaaagagtagtggttacgctaaaactttcctttgtactggttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCAACAATGATCAGTCAG
                         taaaacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcttcaaacctctattagtatatacacgtttttttcatctctcctgcttttgcagtacttatttatagtccacaagcgatcatctttccaaagagtagtggttacgctaaaactttcctttgtactggttaatctagATATGACTTGCTGGATCTTTGCACCAATGGACCAAAAGAAAAGCTTGACTCAACAATGATCAGTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA