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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgcccaatgaattcgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacagACAGAAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACATCAAACTCACAA

Basic information

species Zea mays
transcript GRMZM2G029134_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029134_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g56540.1 (Oryza sativa), 3'ss of exon 3
gtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgcccaatgaattcgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacagACAGAAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACATCAAACTCACAA
                                                                                       |||   |  |   || |||  | |   |||    |  ||  ||    |||  ||||      |  || |||   ||  | |  |  | | | ||  |||| ||   |||||| | ||| || || ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||  | |||| ||| |||||||
---------------------------------------------------------------------------------------tgcaaagattagctactag-tactttttttcctgcaaattatgtt--atgtgttcga-----taacagaagtt-catattttgtttacattattattactgttga-acagACTGCAAAGATTAACCAAGGGAACACGGCTTTGAAACGAGTGGTTGAGTCCATTGCTAATGGTGACTCCCATGTTCCATTTCGAGACAGCAAGCTCACAA

upper sequence: GRMZM2G029134_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 4
gtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacact--gatcttgcccaatgaattcgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacagACAGAAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACATCAAACTCACAA
                                                                                                            | |   |||  || |  ||| || |    |  | || | |   | ||          |   | || | || ||||   |   || | | |||| | ||||||||||||||| || |  ||| ||||| ||||||| ||||| ||||| ||||| ||||| ||||| || |||||||||| |||||| || |
----------------------------------------------------------------------------------------------------------gtaatttttttaccattttgatttttcttttttgaatcatgcagttctc--------tgctgattatta-tactgttaacaaaattat-atagACTGCAAAAATCAATCAAGGAAATATAGCTCTGAAGAGAGTGGTGGAGTCCATTGCAAATGGCGATTCACATGTGCCTTTCAGGGACAGCAAACTTACCA

upper sequence: GRMZM2G029134_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA20G34970.1 (Glycine max), 3'ss of exon 3
gtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgcccaat-gaattcgtaccactgtcaaaagccacacgtgtgatcaata----gtgttgctacttttttcacagACAGAAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACATCAAACTCACAA
                                                                                                                     |  |||  | ||||| | | || ||| |       |||       | |   |||| | ||     |  ||  | |    | | |||| | ||||||||||||||| || |  ||  ||||| ||||||| ||||| ||||| ||||| ||||| ||||| || || ||||||| |||||| || |
---------------------------------------------------------------------------------------------------------------------gtaact--ttttgccaatttgatttcattttttaatcatgtagttctctgctgattagtatactatactgtcaatgaaattatagACTGCAAAAATCAATCAAGGAAATATAGCGCTGAAGAGAGTGGTGGAGTCCATTGCAAATGGCGATTCACATGTGCCTTTTAGGGACAGCAAACTTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacagACAGAAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACATCAAACTCACAA
                                     ttgctacttttttc  CT-rich tract
                                         tactttttt  TA-rich tract