1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaaagtgcatgtttaatgtatgtcacctgtttatttattaaatttcgtatcttcaaatcgtccactggaaaacaaactaaaacagATGATTATGGTAAGAGAAGAAAATGATCCTGCTCCAGAAGGAGTTGAGTACAAGCATGGGCTTACTCCTCTAATGAGGGATGCACGCAGGCGACGTTTCC
species | Zea mays |
transcript | GRMZM2G029038_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAAAACATATGATGATTCTGTACTAATTAAAACTGCTGATGTTGGTCAG ATGATTATGGTAAGAGAAGAAAATGATCCTGCTCCAGAAGGAGTCGAGTACEST: gi|211453746|gb|FL373109.1|FL373109
genomic: ACAAAACATATGATGATTCTGTACTAATTAAAACTGCTGATGTTGGTCAGgtaaaagtgc ... actaaaacagATGATTATGGTAAGAGAAGAAAATGATCCTGCTCCAGAAGGAGTTGAGTAC
EST: ACAAAACATATGATGATTCTGTACTAATTAAAACTGCTGATGTTGGTCAG ATGATTATGGTAAGAGAAGAAAATGATCCTGCTCCAGAAGGAGTCGAGTACEST: gi|166505827|gb|EG177850.1|EG177850
genomic: ACAAAACATATGATGATTCTGTACTAATTAAAACTGCTGATGTTGGTCAGgtaaaagtgc ... actaaaacagATGATTATGGTAAGAGAAGAAAATGATCCTGCTCCAGAAGGAGTTGAGTAC
EST: ATTAAAACTGCTGATGTTGGTCAG ATGATTATGGTAAGAGAAGAAAATGATCCTGCTCCAGAAGGAGTTGAGTAC
genomic: ATTAAAACTGCTGATGTTGGTCAGgtaaaagtgc ... actaaaacagATGATTATGGTAAGAGAAGAAAATGATCCTGCTCCAGAAGGAGTTGAGTAC
ttatttattaaatttcgtatcttcaaatcgtccactggaaaacaaactaaaacagATGATTATGGTAAGAGAAGAAAATGATCCTGCTCCAGAAGGAGTTGAGTACAAGCATGGGCTTACTCCTCTAATGAGGGATGCACGCAGGCGACGTTTCC
aactaaa putative branch site (score: 136)
tattaaatttcgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagtgcatgtttaatgtatgtcacctgtttatttattaaatttcgtatcttcaaatcgtccactggaaaacaaactaaaacagATGATTATGGTAAGAGAAGAAAATGATCCTGCTCCAGAAGGAGTTGAGTACAAGCATGGGCTTACTCCTCTAATGAGGGATGCACGCAGGCGACGTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC