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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacgtccccagctccatccaccgaaatgcagctccgccctggcgcaaatggatggaccagtcgtgcggctttcgatgcttcttcgttactctcaactgttcactcaactcgtcctgtgcgcgccggcgctttgtttgtagGCTGCCAGCGTGTGACCGGTGATGAGGAGGAGGACGGCGTCGATGACCTGGACAACGAGTTCAACTGGAACGGCCATGACTCGCGGTCTGTGGCCGACTC

Basic information

species Zea mays
transcript GRMZM2G028353_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028353_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g24190.1 (Oryza sativa), 3'ss of exon 2
gtgaacgtccccagctccatccaccgaaatgcagctccgccctggcgcaaatggatggaccagtcgtgcggctttcgatgcttcttcgttactctcaactgttcactcaactcgtcctgtgcgcgccggcgctttgtttgtagGCTGCCAGCGTGTGACCGGTGATGAGGAGGAGGACGGCGTCGATGACCTGGACAACGAGTTCAACTGGA---ACGGCCATGACTCGCGGTCTGTGGCCGACTC
                         | ||  ||   ||||  || || |   |     |   | |   |  ||  |    |  | | ||| | | ||| || |||||| | ||| ||  ||  ||            ||| ||| |||   |||||| |||| || |||||||||||||| || ||||||||||| ||||||||||||||||   || |  ||||||||| ||  || || ||   
-------------------------gcaagtcacacccgcaatgccgaattggtggcaatttgccccccccctcccccccccgcctagtt-cccccaattgctcactcgattcgcccc-tgatcgata---------ttgcagGTTGCGCTCGTGTGCCCGGGGACGAGGAGGAGGACGGTGTGGATGACCTGGAGAACGAGTTCAACTGGAGGGACAGGAATGACTCGCAGTACGTCGCGGA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211539098|gb|FL044734.1|FL044734
EST:     GGGCACGCAGAACTGCCCCCAGTGCAGGACCCGGTACAAGCGCCTCAAGG                         GCTGCCAGCGTGTGACCGGTGATGAGGAGGAGGACGGCGTCNATGACCTGG
genomic: GGGCACGCAGAACTGCCCCCAGTGCAGGACCCGGTACAAGCGCCTCAAGGgtgaacgtcc ... ttgtttgtagGCTGCCAGCGTGTGACCGGTGATGAGGAGGAGGACGGCGTCGATGACCTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactctcaactgttcactcaactcgtcctgtgcgcgccggcgctttgtttgtagGCTGCCAGCGTGTGACCGGTGATGAGGAGGAGGACGGCGTCGATGACCTGGACAACGAGTTCAACTGGAACGGCCATGACTCGCGGTCTGTGGCCGACTC
                                           ctttgttt  CT-rich tract
                                            tttgttt  TA-rich tract