1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttggcttacacccccacccttattacaattcttgtcttaattgtatgttggcaattggttgaaattacccagttctatgtcttcctgagtgtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAAGAAACCATTGAAAGACTAATTGTTGAGTGTGAAAGGAAGATTCAGAGA
species | Zea mays |
transcript | GRMZM2G028096_T04 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTATTGATAACTATGACCGTEST: gi|211342904|gb|FL126053.1|FL126053
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGT
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGKGAATTGGAEST: gi|211342898|gb|FL126047.1|FL126047
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGC-AAAGCCAAAGGTACTGATAACTATGGACCGTGGAATTGEST: gi|211342902|gb|FL126051.1|FL126051
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATG-ACCGTG-AATTG
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAEST: gi|211340511|gb|FL126040.1|FL126040
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAEST: gi|211342905|gb|FL126054.1|FL126054
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAEST: gi|211342900|gb|FL126049.1|FL126049
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAEST: gi|71764556|gb|DR962493.1|DR962493
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAEST: gi|74232160|gb|DT640074.1|DT640074
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAEST: gi|211342892|gb|FL126041.1|FL126041
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGC-AAAGCCAAAGGTACTGATAACTATGGACCGGGGAATTGEST: gi|211342897|gb|FL126046.1|FL126046
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATG-ACCGTG-AATTG
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAEST: gi|211342893|gb|FL126042.1|FL126042
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAEST: gi|211342896|gb|FL126045.1|FL126045
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAEST: gi|211340507|gb|FL126036.1|FL126036
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTATTGATAACTATGACCGTGAATTGGAEST: gi|211340510|gb|FL126039.1|FL126039
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGA
EST: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA ATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTG
genomic: ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAgtatccttcc ... gtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTG
tgttggcaattggttgaaattacccagttctatgtcttcctgagtgtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAAGAAACCATTGAAAGACTAATTGTTGAGTGTGAAAGGAAGATTCAGAGA
ttcctgagt putative branch site
ttgaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggcttacacccccacccttattacaattcttgtcttaattgtatgttggcaattggttgaaattacccagttctatgtcttcctgagtgtgtcaatagATATGAAGAAGCCAAAGCCAAAGGTACTGATAACTATGACCGTGAATTGGAAGAAACCATTGAAAGACTAATTGTTGAGTGTGAAAGGAAGATTCAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA