1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcggttcccatgatcccgtccccgttcatcaatccacacagcctgctcgagtctaacctattttcatctctctcttccaatcccacgcatgattgctcgcgtgcagGAGGCGTACTGTAACATGCTCGTCAAGTACCGGGAGGAGCTCACCCGGCCGATCGACGAGGCCATGGAGTTCCTCAAGCGGGTGGAGGCGCAGCTCGACT
species | Zea mays |
transcript | GRMZM2G028041_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCCGCCGGGCCGCCACGAGNCGCGCGACCCGGAGCTGGACCAGTTCATG GAGGCGTACTGTAACATGCTCGTCAAGTACCGGGAGGAGCTCACCCGGCCGEST: gi|31910085|gb|CD651247.1|CD651247
genomic: GCCCGCCGGGCCGCCACGAGCCGCGCGACCCGGAGCTGGACCAGTTCATGgtcggttccc ... tcgcgtgcagGAGGCGTACTGTAACATGCTCGTCAAGTACCGGGAGGAGCTCACCCGGCCG
EST: GCCCGCCGGGCCGCCACGAGCCGCGCGACCCGGAGCTGGACCAGTTCATG GAGGCGTACTGTAACATGCTCGTCAAGTACCGGGAGGAGCTCACCCGGCCG
genomic: GCCCGCCGGGCCGCCACGAGCCGCGCGACCCGGAGCTGGACCAGTTCATGgtcggttccc ... tcgcgtgcagGAGGCGTACTGTAACATGCTCGTCAAGTACCGGGAGGAGCTCACCCGGCCG
tctaacctattttcatctctctcttccaatcccacgcatgattgctcgcgtgcagGAGGCGTACTGTAACATGCTCGTCAAGTACCGGGAGGAGCTCACCCGGCCGATCGACGAGGCCATGGAGTTCCTCAAGCGGGTGGAGGCGCAGCTCGACT
gtctaac putative branch site (score: 2)
tattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggttcccatgatcccgtccccgttcatcaatccacacagcctgctcgagtctaacctattttcatctctctcttccaatcccacgcatgattgctcgcgtgcagGAGGCGTACTGTAACATGCTCGTCAAGTACCGGGAGGAGCTCACCCGGCCGATCGACGAGGCCATGGAGTTCCTCAAGCGGGTGGAGGCGCAGCTCGACT
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