Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgtaggtcttctctaacaacagcgcagtcttttccatagagttacttctcttggctatctaatttgtttccacgtccaacaacatttctctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA

Basic information

species Zea mays
transcript GRMZM2G027378_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027378_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT2G36060.2 (Arabidopsis thaliana), 3'ss of exon 2
------------------tctgtaggtcttctct-aacaacagcgca----gtcttttccatagagttacttctcttggctatctaatttgtttccacgtccaacaacatttctctttgt-cagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA
                  | | |     | || | ||  | ||  |     ||||| | | |  |     ||    ||    | | || || ||  |  |  |     | || | ||||| |||||||||||||||||||| || || ||| ||||| | || ||||||||||| || || ||||| || ||  ||||  | ||||| ||  | ||||||||||
gttatatctctgtttttttttcttcacttgctatgaatgataggactttgtgtcttcttcttgaatggtgttggaatgatattgtgatgtgatttgatctg-actggtaattttgtttgtgcagACTGTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGA

upper sequence: GRMZM2G027378_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT2G36060.3 (Arabidopsis thaliana), 3'ss of exon 2
---------------------tctgtaggtcttctct-aacaacagcgca----gtcttttccatagagttacttctcttggctatctaatttgtttccacgtccaacaacatttctctttgt-cagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA
                     | | |     | || | ||  | ||  |     ||||| | | |  |     ||    ||    | | || || ||  |  |  |     | || | ||||| |||||||||||||||||||| || || ||| ||||| | || ||||||||||| || || ||||| || ||  ||||  | ||||| ||  | ||||||||||
gtagttatatctctgtttttttttcttcacttgctatgaatgataggactttgtgtcttcttcttgaatggtgttggaatgatattgtgatgtgatttgatctg-actggtaattttgtttgtgcagACTGTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGA

upper sequence: GRMZM2G027378_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G52560.1 (Arabidopsis thaliana), 3'ss of exon 2
tctgtaggtcttctctaacaacagcgcagtcttttccatagagttacttctcttggctatctaatttgtttccacgtccaacaacat-ttctctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA
    | | |||| || |   |||      |    |  ||      |  |        | |    |||| ||  |    ||   | |  || | | |  |||||||| ||||| ||| | ||||| ||| ||||| | |||||||||||||| || |||||||| || ||| ||||| ||||||| ||| |  |||||||| 
-gcattgatcttatcgacatacaatctcttaagctttatttgagcagattatgccattgttgcttttgcttgtagtaacagagataaattttatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCGGAGAAACCTCCAACTGTCCGATTCCATTCACGTGTCAACATGG

upper sequence: GRMZM2G027378_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
tctgtaggtcttctctaacaacagcgcagtcttttccatagagttacttctcttggctatctaatttgtttccacgtccaacaacatttct-----ctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA
     || | || | |    | |||  | ||  |    ||   |   |||||    ||||  |    | ||  | || ||  |||  || |     |||| |||| |||||||||| |||||||| || || |||||| | |||||||| ||||| |||||||||||||| ||   |||  | ||||| ||| | ||||||||||
----aagattttgtgtt-tgatagcttattccatcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA

upper sequence: GRMZM2G027378_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 3'ss of exon 2
tctgtagg-tcttctctaacaacagcgcagtcttttccatagagttacttct--cttggctatctaatttgttt-ccacgtccaacaacatttctctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA
    |||  |    | ||  |     |  || ||     | || ||  | ||    ||| || || |   |      ||   |  |  | ||  | ||| ||||||||||||||| |||||||| || ||| ||||| |||| ||||||||||| ||||| ||||||||||||  |||| | || || ||| | ||||||||||
----tagaatgaaatgtactattgttgaggttttggattttgacttcttgctgatatggatagcttacaagcacattacaatcttctcctttattttttttcagACTGTACATGAAGGTCGCATATATCAGTTGAAGCTGTTCTGTGACAAAGATTATCCAGAGAAGCCACCAAGTGTCCGTTTTCATTCACGGATCAACATGA

upper sequence: GRMZM2G027378_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S60_129V6.1 (Physcomitrella patens), 3'ss of exon 3
tctgtaggtcttctcta-acaacagcgcagtcttttccatagagttacttctcttggctatctaatttgtttccacgtccaacaacatttctctttgt-cagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA
   ||   |  | | ||     | ||||||  |            | |   | ||   || || | ||||   |     ||   | | | || ||||| ||| |||| || || ||||| ||||||    ||||||| ||||| ||||| |||||||| || ||||| ||| |||| |||||||||||  ||||||| ||||
-tggttcatgatgtgtatgtttctgcgcagcttaagttgcctccatcccaatgttttgtaactgagttgtcatcg-acacattcaaactgctttttgtgcagTCTGTCCACGAAGGTCGGATCTACACATTGAAGTTATTTTGCGACAAGGACTATCCCGACAAGCCTCCAACTGTTAGATTCCACTCCCGAATCAATATGA

upper sequence: GRMZM2G027378_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ15952 (Selaginella moellendorffii), 3'ss of exon 2
tctgtaggtcttctctaacaacagcgcagtcttttccatagagttacttctc-ttggctatctaatttgtttccacgtccaacaacatttctctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA
       ||| ||| |             |  ||||  |    ||||    |  || || | |   || |||       ||      ||| |  |   ||| |||| || || || ||||| || ||||| |||||||  || ||||||||||||||||| |||||||||  |||  ||||||| ||  ||||||||||||
-------gtcctctttctt------ttttttctttctttgctcttacaatgcactgactctttcgctttttttttttctca------tttattctgtgcagTCTGTTCACGAAGGACGCATTTATCAGCTTAAGTTGTACTGCGACAAAGACTATCCGGATAAGCCACCAAGTGTGCGATTCCATTCGCGAATCAACATGA

upper sequence: GRMZM2G027378_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ33318 (Selaginella moellendorffii), 3'ss of exon 2
tctgtaggtcttctctaacaacagcgcagtcttttccatagagttacttctcttggctatctaatttgtttccacgtccaacaacatttctctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA
                     |  |    | ||||   |    || || ||  |      || | |  ||||    |       ||||| |  |   ||| |||| || || || ||||| || || || |||||||  || ||||||||||||||||| |||||||||  |||  ||||||| ||  ||||||||||||
-------------------gtcctctttcttttttttctttctttgct-cttataatgccctgactc-tttcgcttttttttctcatttattctgtgcagTCTGTTCACGAAGGACGCATTTATCAACTTAAGTTGTACTGCGACAAAGACTATCCGGATAAGCCACCAAGTGTGCGATTCCATTCGCGAATCAACATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14701404|gb|BI233822.1|BI233822
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211435248|gb|FL105638.1|FL105638
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211055485|gb|FL105742.1|FL105742
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211437851|gb|FL105660.1|FL105660
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211432642|gb|FL105623.1|FL105623
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211058478|gb|FL105763.1|FL105763
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTG
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTG
EST: gi|211435249|gb|FL105639.1|FL105639
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211052547|gb|FL105732.1|FL105732
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211040693|gb|FL105669.1|FL105669
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211058468|gb|FL105753.1|FL105753
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|37423036|gb|CF649242.1|CF649242
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211046631|gb|FL105707.1|FL105707
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211043659|gb|FL105683.1|FL105683
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211052551|gb|FL105736.1|FL105736
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211430046|gb|FL105613.1|FL105613
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211432648|gb|FL105629.1|FL105629
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211437847|gb|FL105656.1|FL105656
EST:     ATGACATCTACATGCGGTCATNGACTGKTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211437844|gb|FL105653.1|FL105653
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211040700|gb|FL105676.1|FL105676
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211430050|gb|FL105617.1|FL105617
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211040698|gb|FL105674.1|FL105674
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGGTACATGAGGGTCGCATCTACCAAGCTGAAGTTGTTTTGTGACAAAG
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTG-TACATGAGGGTCGCATCTACCA-GCTGAAGTTGTTTTGTGACAAAG
EST: gi|211043654|gb|FL105678.1|FL105678
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211049592|gb|FL105722.1|FL105722
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCRTCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211055484|gb|FL105741.1|FL105741
EST:     TGACATCTACATGCGGTCATKGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: TGACATCTACATGCGGTCAT-GGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211049591|gb|FL105721.1|FL105721
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211055481|gb|FL105738.1|FL105738
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCCTACCAGCTGAAGTTGTTTTGTGACAAGGA
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATC-TACCAGCTGAAGTTGTTTTGTGACAAAGA
EST: gi|211046629|gb|FL105705.1|FL105705
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211052545|gb|FL105730.1|FL105730
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211040696|gb|FL105672.1|FL105672
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211052544|gb|FL105729.1|FL105729
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAA-GAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211046624|gb|FL105700.1|FL105700
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211437841|gb|FL105650.1|FL105650
EST:     ATGACATCTACATGCGGTCATGGACTGGTACSATCATTGGCCCTCACAAT                         ASTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211052543|gb|FL105728.1|FL105728
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGA
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGA
EST: gi|211052546|gb|FL105731.1|FL105731
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211430048|gb|FL105615.1|FL105615
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211040692|gb|FL105668.1|FL105668
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|28566611|gb|CB278259.1|CB278259
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGG
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGG
EST: gi|211040690|gb|FL105666.1|FL105666
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211430044|gb|FL105611.1|FL105611
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAA-GAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211061438|gb|FL105769.1|FL105769
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211435245|gb|FL105635.1|FL105635
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211058476|gb|FL105761.1|FL105761
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211043665|gb|FL105689.1|FL105689
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211049584|gb|FL105714.1|FL105714
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211046622|gb|FL105698.1|FL105698
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211043667|gb|FL105691.1|FL105691
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211435257|gb|FL105647.1|FL105647
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211046619|gb|FL105695.1|FL105695
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|14242915|gb|BG840223.2|BG840223
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|14701444|gb|BI233862.1|BI233862
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC
EST: gi|211052548|gb|FL105733.1|FL105733
EST:     ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAAT                         ACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGAC
genomic: ATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacac ... tctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctcttggctatctaatttgtttccacgtccaacaacatttctctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA
             atctaat  putative branch site (score: 3)
                                       catttctctttgtc  putative PPT
            tatctaatttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctgtaggtcttctctaacaacagcgcagtcttttccatagagttacttctcttggctatctaatttgtttccacgtccaacaacatttctctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC