1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actccttatctgagtgtctttactgatatatttgatttcgccagcactttgatttatatttttctgttttccttaacatgttttacctttgtaaacacagGGTTCAGGAGCAGAGTAAAATATTTCAGCATCGTGGATCCAACACAAATGGCATACTACATATCTGAAATATTAGACGCTGGACCACAGGGACCTCTGTT
species | Zea mays |
transcript | GRMZM2G027075_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAG GGTTCAGGAGCAGAGTAAAATATTTCAGCATCGTGGATCCAACACAAATGGEST: gi|74239884|gb|DT647798.1|DT647798
genomic: TGTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAGgttcgtcttc ... gtaaacacagGGTTCAGGAGCAGAGTAAAATATTTCAGCATCGTGGATCCAACACAAATGG
EST: TGTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAG GGTTCAGGAGCAGAGTAAAATATTTCAGCATCGTGGATCCAACACAAATGG
genomic: TGTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAGgttcgtcttc ... gtaaacacagGGTTCAGGAGCAGAGTAAAATATTTCAGCATCGTGGATCCAACACAAATGG
actttgatttatatttttctgttttccttaacatgttttacctttgtaaacacagGGTTCAGGAGCAGAGTAAAATATTTCAGCATCGTGGATCCAACACAAATGGCATACTACATATCTGAAATATTAGACGCTGGACCACAGGGACCTCTGTT
ccttaac putative branch site (score: 3)
cctttgt putative PPT
atttatatttttctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actccttatctgagtgtctttactgatatatttgatttcgccagcactttgatttatatttttctgttttccttaacatgttttacctttgtaaacacagGGTTCAGGAGCAGAGTAAAATATTTCAGCATCGTGGATCCAACACAAATGGCATACTACATATCTGAAATATTAGACGCTGGACCACAGGGACCTCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA