1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagaataatccactgttctaccttttcttgtattgccctgcaacatatggctgctctatgtctttcctggcaaattcaataaactcttgctgttgtccagGTGATGGCAGATTATGGTTACAGCATTGAGCACATTCTCATGGTTGATATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG
species | Zea mays |
transcript | GRMZM2G026884_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGAGCAGAAGAACGATGTGGCCAAAGCTGTATTGGAGGAGCTTGAAAAG GTGATGGCAGATTATGGTTACACGCATTGAGCACATTCTCATGGTTGATATEST: gi|111991179|gb|EE332274.1|EE332274
genomic: TTGAGCAGAAGAACGATGTGGCCAAAGCTGTATTGGAGGAGCTTGAAAAGgtatttctaa ... tgttgtccagGTGATGGCAGATTATGGTTACA-GCATTGAGCACATTCTCATGGTTGATAT
EST: GGAGCTTGAAAAG GTGATGGCAGATTATGGTTACAGCATTGAGCACATTCTCATGGTTGATATC
genomic: GGAGCTTGAAAAGgtatttctaa ... tgttgtccagGTGATGGCAGATTATGGTTACAGCATTGAGCACATTCTCATGGTTGATATC
tatggctgctctatgtctttcctggcaaattcaataaactcttgctgttgtccagGTGATGGCAGATTATGGTTACAGCATTGAGCACATTCTCATGGTTGATATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG
ctcttgct CT-rich tract
aaattcaataaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaataatccactgttctaccttttcttgtattgccctgcaacatatggctgctctatgtctttcctggcaaattcaataaactcttgctgttgtccagGTGATGGCAGATTATGGTTACAGCATTGAGCACATTCTCATGGTTGATATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT