1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acatatgtatccgtttttcaccattcatcaggatttaacttttctgactaaaggtggtttattctggctgaagggataattgtgttccaaattttcttagGTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGCAATGAGCTTAG
species | Zea mays |
transcript | GRMZM2G026869_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TNNNNNNNCGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCG GTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGCEST: gi|78118115|gb|DV536502.1|DV536502
genomic: TAAAAAAACGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCGgtattttttt ... attttcttagGTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGC
EST: TNNNNNNNCGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCG GTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGC
genomic: TAAAAAAACGCGGTTATCGCATTGCGACCACTTATTTGGGAACTGATTCGgtattttttt ... attttcttagGTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGC
gactaaaggtggtttattctggctgaagggataattgtgttccaaattttcttagGTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGCAATGAGCTTAG
gactaaa putative branch site (score: 2)
ttttctt putative PPT
aaattttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatatgtatccgtttttcaccattcatcaggatttaacttttctgactaaaggtggtttattctggctgaagggataattgtgttccaaattttcttagGTTTGTGTGTATGATATGGATTGGTCTCAACCAACAGCTATTGTTGTGGGCAATGAGCTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT