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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtgccgcgacgtactccagcagctactaccaatgtttcctttgtgctaacccgcgaccgattttggctatctaaattggagcagAAGTACCGTTCCCACAGGAAGCACATGCTTGCGAGGGAGGTGGAGGCAGCGACGTGGACGACGCACCGGCGGCCGATGTACGCTGCCCCCAGCGGCGCCG

Basic information

species Zea mays
transcript GRMZM2G026833_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026833_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g24070.1 (Oryza sativa), 3'ss of exon 2
----gtccgtgccg--cgacgtactccagcagctac-taccaatgtttcctttgtgctaacccgc-gaccgattt-tggct--atctaaattgga-gcagAAGTACCGTTCCCACAGGAAGCACATGCTTGCGAGGGAGGTGGAGGCAGCGACGTGGACGACGCACCGGCGGCCGATGTACGCTGCCCCCAGCGGCGCCG---
     | |     |  | |   | |  || |   || |    || ||    | || ||  ||| |  |  || || |  ||  || ||||||    |||||||||||| || ||||| || |||||| ||||||| |||| |||||||||||  |||||    || ||||||| ||| ||||| |||    | || || |   
acatcttcaaattgttcaaacgaatatagtatagaccttgttattttgggatcgtcctggcccactaattgacttatcacttcatgtaaattatttgcagAAGTACCGGTCACACAGAAAACACATGATTGCGAGAGAGGCGGAGGCAGCGAGTTGGACC---CAACGGCGGCAGATTTACGCCGCCGGTGGAGGTGCTGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148995824|gb|EE035059.2|EE035059
EST:     TCATGGGGATCGACTCCCTCACGCGGCATAACATAGCCAGCCATCTGCAG                         AAGTACCGTTCCCACAGGAAGCACATGCTTGCGAGGGAGGTGGAGGCAGCC
genomic: TCATGGGGATCGACTCCCTCACGCGGCATAACATAGCCAGCCATCTGCAGgtccgtgccg ... attggagcagAAGTACCGTTCCCACAGGAAGCACATGCTTGCGAGGGAGGTGGAGGCAGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgtttcctttgtgctaacccgcgaccgattttggctatctaaattggagcagAAGTACCGTTCCCACAGGAAGCACATGCTTGCGAGGGAGGTGGAGGCAGCGACGTGGACGACGCACCGGCGGCCGATGTACGCTGCCCCCAGCGGCGCCG
                                      tatctaaatt  TA-rich tract