1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctcatggttttactttaacataaatgaacaagcaaataattggaagcaacgattggcttcttctgatttattggccactgtggttttgctcacgtgcagGGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACATTTCCCAAGCATTGGAATACTGTAGTACCAAGGGGTGGCCTTTATATCA
species | Zea mays |
transcript | GRMZM2G026767_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACT GGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACAEST: gi|76937335|gb|DV175108.1|DV175108
genomic: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACTgtgagcccct ... tcacgtgcagGGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACA
EST: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACT GGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACAEST: gi|149098700|gb|EE184712.2|EE184712
genomic: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACTgtgagcccct ... tcacgtgcagGGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACA
EST: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACT GGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACA
genomic: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACTgtgagcccct ... tcacgtgcagGGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACA
agcaacgattggcttcttctgatttattggccactgtggttttgctcacgtgcagGGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACATTTCCCAAGCATTGGAATACTGTAGTACCAAGGGGTGGCCTTTATATCA
tgctcac putative branch site (score: 37)
ttttgctc CT-rich tract
tgatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctcatggttttactttaacataaatgaacaagcaaataattggaagcaacgattggcttcttctgatttattggccactgtggttttgctcacgtgcagGGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACATTTCCCAAGCATTGGAATACTGTAGTACCAAGGGGTGGCCTTTATATCA
- - - - - - - - -aacataa
- - - - - - - - - - - - - - -caagcaa
- - - - - - - - - - - - - - - - - - - - - - aagcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccactg