Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctcatggttttactttaacataaatgaacaagcaaataattggaagcaacgattggcttcttctgatttattggccactgtggttttgctcacgtgcagGGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACATTTCCCAAGCATTGGAATACTGTAGTACCAAGGGGTGGCCTTTATATCA

Basic information

species Zea mays
transcript GRMZM2G026767_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 3'ss of exon 2
----------cctcatggttttactttaacataaatgaacaagcaaataattggaagcaacgattggcttcttctgatttattggccactgtggttttgctcacgtgcagGGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACATTTCCCAAGCATTGGAATACTGTAGTACCAAGGGGTGGCCTTTATATCA
            | || |||     |||||    || ||||||||||  |||||||  ||| |   | |  || |||| |       || ||| |||||| |  |||||||||||||| || ||||||| ||||||||||| || |||||||||||| ||||| |  ||||||||||||| ||||| |   |||   |||||||||||||
taaggattgcatttattgttagtggttaacgcgtataaacaagcaaagcattggaa--aacaa---gttaattttgatct-----taaccgtgcttttgcacttgtgcagGGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACATTGCTGAAGCATTGGAATATTGTAGCAATGAGGAAAGGCCTTTATATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaacgattggcttcttctgatttattggccactgtggttttgctcacgtgcagGGGAAAACCAGACTATTGAGTGGGCTATGCGTCTGAGAGTTGCATACTACATTTCCCAAGCATTGGAATACTGTAGTACCAAGGGGTGGCCTTTATATCA
                                          tgctcac  putative branch site (score: 2)
                                       ttttgctc  CT-rich tract
                   tgatttatt  TA-rich tract