1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgcccatactgttcccatttcatcctttttctttatttactgtttattggaaagctgatctagtatgtgcttttcctgcaagtataactttttttttgtctcactgactgtataaatgttactttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGTCCAGCAGTTTGCTGATGCCATTGAAAGCTCATATTGGTTCGAATTTTT
species | Zea mays |
transcript | GRMZM2G026231_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGEST: gi|31354711|gb|CD439068.1|CD439068
genomic: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccat ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
EST: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGEST: gi|31355875|gb|CD440232.1|CD440232
genomic: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccat ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
EST: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGEST: gi|211369512|gb|FL195175.1|FL195175
genomic: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccat ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
EST: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGEST: gi|211369510|gb|FL195173.1|FL195173
genomic: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccat ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
EST: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGEST: gi|211012618|gb|FL213598.1|FL213598
genomic: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccat ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
EST: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGEST: gi|211366863|gb|FL195171.1|FL195171
genomic: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccat ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
EST: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGEST: gi|31357584|gb|CD441941.1|CD441941
genomic: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccat ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
EST: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGEST: gi|211012620|gb|FL213600.1|FL213600
genomic: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccat ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
EST: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAA AAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
genomic: CCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccat ... tttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGG
gcaagtataactttttttttgtctcactgactgtataaatgttactttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGTCCAGCAGTTTGCTGATGCCATTGAAAGCTCATATTGGTTCGAATTTTT
cactgac putative branch site (score: 147)
ttacttt putative PPT
tataactttttttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcccatactgttcccatttcatcctttttctttatttactgtttattggaaagctgatctagtatgtgcttttcctgcaagtataactttttttttgtctcactgactgtataaatgttactttggtctagAAAACGTGGAGAAGGGCTTCATTTGTACACTTGAGCTTGATGCTAAAAAGGTCCAGCAGTTTGCTGATGCCATTGAAAGCTCATATTGGTTCGAATTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA