1 5' 3' | 2 5' 3' | 3 5' 3' |
gttctccatttgattgcttccgagctatgcagatttagtagtatattttattcctctggaaaacattgctgtacaggttcctgtatggtgacacataatggattgcgatagcattctgtgctgttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
species | Zea mays |
transcript | GRMZM2G025854_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGEST: gi|149095269|gb|EE180897.2|EE180897
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGEST: gi|211022174|gb|FL153047.1|FL153047
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
tcctgtatggtgacacataatggattgcgatagcattctgtgctgttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
ctgttcttttc CT-rich tract
acataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctccatttgattgcttccgagctatgcagatttagtagtatattttattcctctggaaaacattgctgtacaggttcctgtatggtgacacataatggattgcgatagcattctgtgctgttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA