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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctagctagccgcagctccggccagcctgttccgatccggcctgtcgatctgaactgctggcgatgatcttaaatttcctgctctggctggctctgctctcaatctctcaagGGCATTGCGGGATCGGGTACGAGGAGCAAAACGAGTGGTACTTCTTCAGCTACAAGGACCGCAAGTACCCCACGGGGACGCGGACCAACCGGGCCACCAT

Basic information

species Zea mays
transcript GRMZM2G025642_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025642_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g03540.1 (Oryza sativa), 3'ss of exon 1
gtacgctagctagccgcagctccggccagcctgttccgatccggcctgtcgatctgaactgctggcgatgatcttaaatttcctgctctggctggctctgctctcaatctctcaagGGCATTGCGGGATCGGGTACGAGGAGCAAAACGAGTGGTACTTCTTCAGCTACAAGGACCGCAAGTACCCCACGGGGACGCGGACCAACCGGGCCACCAT
                || ||   |   |  || |   ||  |   |     || ||  || |     ||   |||  | ||||  |   | || ||    | |  ||   | |||  ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||||| ||||||||| |||| ||| |||| || ||
-------------gtacaactagagatcgtatgatt-aatttgagtt-----tcagagatgatcattgtggcattatttatcctaattgtgttgcctggtttgttgattgatgaagAACATTGTGGGATCGGGTACGATGAGCAAAGCGAGTGGTACTTCTTCAGCTACAAGGACAGGAAGTACCCGACGGGGACGAGGACGAACAGGGCGACAAT

upper sequence: GRMZM2G025642_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G24200.1 (Glycine max), 3'ss of exon 1
gtacgctagctagccgcagctccggccagcctgttccgatccggcctgtcgatctgaactgctggcgatgatcttaaatttcctgctctggctggctctgctctcaatctctcaagGGCATTGCGGGATCGGGTACGAGGAGCAAAACGAGTGGTACTTCTTCAGCTACAAGGACCGCAAGTACCCCACGGGGACGCGGACCAACCGGGCCACCAT
      | | ||   | |     | | |||  | ||  |    |  | | | | | |  |  |     | |  ||  |  | |     ||| ||    || | | | | |  ||  | |||  | |||| |||||||||||||| ||||||||||| ||||| ||| |||| |||   || || || || |||||  | |||||| | ||||||||
------ttgttaaa-gaaatatggtcaagctagatcttaattagtttatggtttttatttctt----ttaaatttggagatgc----atggttgtgaatgatttgagttttgcagAGACAT-ACAGGATTGGGTACGAGGAGCAGAACGAGTGGTATTTCTTTAGCCACAAAGACAAGAAATATCCAACTGGGACAAGAACCAACAGAGCCACCAT

upper sequence: GRMZM2G025642_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT5G66300.1 (Arabidopsis thaliana), 3'ss of exon 1
gtacgctagctagccgcagctccggccagcctgttccgatccggcctgt-cgatctgaac-tgctggcgatgatcttaaatttcctgctctggctggctctgctctcaatctctca-----agGGCATTGCGGGATCGGGTACGAGGAGCAAAACGAGTGGTACTTCTTCAGCTACAAGGACCGCAAGTACCCCACGGGGACGCGGACCAACCGGGCCACCAT
                                 ||  |||     |  | | | ||  || ||   || |  ||  |   |  |  |     |     | |   || ||| |   |     || |   ||  |||| ||||||||||||||||  |||||||| ||||||||| | |  |||   ||||| || || |||||  |||| ||||| |||||| |
-----------------------aatttatgaattatgatttaaacgataccacctacacatgtaagcaactatactgtgtagctcgaaagagtaatatgtaacctaaatgtgatacgtgtagAGAGATGTAGGATAGGGTACGAGGAGCAAACGGAGTGGTATTTCTTCAGCCATAGAGACAAGAAGTATCCGACTGGGACTAGGACAAACCGAGCCACCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggcgatgatcttaaatttcctgctctggctggctctgctctcaatctctcaagGGCATTGCGGGATCGGGTACGAGGAGCAAAACGAGTGGTACTTCTTCAGCTACAAGGACCGCAAGTACCCCACGGGGACGCGGACCAACCGGGCCACCAT
                                              tctctc  CT-rich tract
      atgatcttaaattt  TA-rich tract