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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atactaatggaacctgagaactattgttgcaccctgtacgaaagattatcatgtgcaactttactcactggtttttgctctcgtactcttgtttttgcagGAGACAATGGCAGACCA

Basic information

species Zea mays
transcript GRMZM2G024615_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211095464|gb|FK961066.1|FK961066
EST:     GTAGCGGCGCCGAGGGCGATATCGAGGAGCCGCTGGTCTCACGCCGCACC                         GAGACAATGGCAGACCA
genomic: GTAGCGGCGCCGAGGGCGATATCGAGGAGCCGCTGGTCTCACGCCGCACCgtgagttctt ... gtttttgcagGAGACAATGGCAGACCA
EST: gi|78083130|gb|DV511523.1|DV511523
EST:     GTAGCGGCGCCGAGGGCGATATCGAGGAGCCGCTGGTCTCACGCCGCACC                         GAGACAATGGCAGACCA
genomic: GTAGCGGCGCCGAGGGCGATATCGAGGAGCCGCTGGTCTCACGCCGCACCgtgagttctt ... gtttttgcagGAGACAATGGCAGACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcatgtgcaactttactcactggtttttgctctcgtactcttgtttttgcagGAGACAATGGCAGACCA
                tactcac  putative branch site (score: 1)
                                        ctcttgttttt  putative PPT
                                           ttgttttt  TA-rich tract