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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

Basic information

species Zea mays
transcript GRMZM2G024354_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctg--------attttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
      | |        || ||| |    |  || |||  || ||||| ||| | |||||||        || ||||       | | |||| || |    || |||||| ||||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
-----gggtgctcccatttatttaccaatttatataatcaca-tttgaatattt-tgtcctgtaatcaaaatattgtgcttaactat-ttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 2
-----tagtatgct-atgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
      | | |  | |  |     ||| || ||||  ||  |||     ||||    ||||  |||  || ||||       | | || ||     |    ||||||| ||||| || |||||||| || || | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
agccaaaatgtattcacatgctgctgtctgattcacttttgaat---gttttggccctata-atccaaatattgtgcataactattttttgac--cttgctttcagGGCTATGTGGTTTACCGTGTTCGCGTCAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATTACCC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G16720.1 (Arabidopsis thaliana), 3'ss of exon 2
--tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatct---tcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
  ||||     |   ||      ||| || ||  |  |||  || ||| |  || ||    |  ||| |||   |  |   |||| | |  || || |   |||||| | |||||| |||||||| |||||||  ||||||||  | |||||||| ||||| ||||||||||| ||||| ||||| |   |||||||  | || |
gttagtggagaaatatggaagcgttgtttgatgattgaat--cattttta--atctagtctcaaattctgttacaaatctagttgagatg-ttgatgtatgtcagGGCTTTGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATTGTGTATGGTAAGCCAACAAACCAGGGAGTGACAC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 2
-------tagtatgctatgttgccttgtt--tgcttcatctt--acaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
         || | | || || || || |  ||||  || ||     | |||||  | | |||  || |  | || | || |       ||||     |||   | ||||||| |||||  |||| ||||| ||||| |  || ||||| ||||||||||| || || ||||||||||| ||||| |||||||   |||| ||| |||| |
tgattttctgtttac-atttttccctgctggtgctctatatttagtcactgcagcgttaatattcatat--taatatcgtgta----catgtta--acaatc--ttttcagGGTTATGTGATCTATCGTGTACGTGTAAGACGCGGTGGAAGGAAGAGGCCAGTCCCAAAGGGTATTGTGTATGGTAAGCCCACAAACCAAGGTGTCACTC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
--tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcat-cttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
  |   |   ||||      ||     || || | | ||  |||    ||  ||   | |  | | ||||  | |   ||        || ||  |  || |||| |||||| |||| ||||| ||||| |  ||||||||  ||||||||||||| |||||||| ||||| ||||| ||||| |   |||||||| ||||||
tgtttaaaattatgacaaactggcccattaatttgataa--gcatcaagacgatgattctttttactttgatt-ataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
--tagtatgctatgttgccttgtttgcttcatcttacaat-tgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
  || |   || | | |      || || |  |||  ||| |  |      | ||   |  |   || |   |  | |      || | |      | ||||||| |||||  | || ||||| ||||| |  ||||||||  |||||||||||||||||||||| ||||| ||||| |||||||   |||| ||| | ||||
tctaat-cactctctcgatccagtt-ctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctg-gatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
----tagt-atgctatg-ttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctga-cgttgtgttgtg-gtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
    |  | |   |||| | |   |   |  ||  | |  ||| |   ||  ||||||   ||   |  || |  |||| |  | |  |||| || |        ||||| || || || || || ||||| ||    || || || ||||||||||||||  ||||||||||||| ||||| || || ||| ||||||||||||| |
ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtga--------cagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S34_445V6.1 (Physcomitrella patens), 3'ss of exon 2
-------tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatg-tcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
        ||   || | | |    | ||| ||| |  |   | |||    |||| |  ||  | | || ||    |||||| |    | || ||  |     || |||| ||||| || || || ||||| |||   ||||| |||||||||||||| ||  ||||||||||||| ||||| ||||| ||| |||| ||||| || |
tcaacatcagctcgccaaggttaaatatttacttaacatggtatttg----ttgattccatgcgattctaat----tctgacatatcatcgttgtggtcttgttttagGGTTATGTGGTGTATCGCGTCCGCGTGCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCTAAGAACCAAGGTATTACAC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S152_141V6.1 (Physcomitrella patens), 3'ss of exon 2
tagtatgctatgttgccttgtttgcttcatcttacaattgc----agtttgagtatatatgtcctgattttgtct-gacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
    |||      |   ||    || |||| |   | |       | ||  ||| | ||  ||||| | |  ||| ||| |||   |||  | || | | |  |||||||||| || ||||||||||| ||    ||||| |||||||||||||| ||| | ||||||||||| ||||| || || ||| |||||||||| || |
-gtcatgactctatctttttagggcatcatttcgaattcttcataatttcaagtgtttac-tcctgttctactcttgacattgg--tgtcattat-cttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAGTGGCGAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATTACAC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S28_15V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------tagtatgctatgttgccttgtttgctt-catcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
               ||||   ||  ||  |||| ||| ||   || | ||||| |   | | |||  |  |  |||||| | ||||    ||||||   |||        |||||| || || || |||||||| ||||||   ||||| |||||||||||||||||  | ||||||||||| || || ||||| ||| |||||||||| || |
ctgctgtcagtcttgagtaaaatacattctcttgcttgtttgtctccttcaatttcttgtggggtacttg-gagctgattatttctg----tgtgttt--gta--------tcagGGCTACGTGGTGTACCGTGTTCGTGTGCGCCGTGGAGGCAGGAAGAGGCCTGTTGCTAAGGGTATTGTGTACGGAAAGCCAAAGAACCAGGGTATTACAC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 3'ss of exon 2
----tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
    | |  | |  | | |   |  | | || || | | ||  |   | || || |||  |    ||   | | | || || || | |      | || || |||| |||||||| || || ||||| |||   ||||| |||||||||||||| ||  ||||||||||||| ||||| ||||||||| |||| ||||| || |
cacgtggcgttcagtatagttattgtggattgat-tcagaaaggatttgtgggt-tatccgcttcgaagct-tttaacattatgatttatggccttat-tttagGGCTATGTTGTGTATCGCGTCCGCGTGCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAAGGTATTACGC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgat-tttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
|  ||   |      || |  ||| |            | |  |     |  ||||||   ||| | |   |       || |   | |  ||| || ||||||||||| |||||||||||||||||    ||||| |||||||||||||| ||  ||||||||||||| ||||| ||||||||| |||||||||| || |
ttatacttttcagcacccttgttgttagggtgcctggattctatccatatg-atatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ27946 (Selaginella moellendorffii), 3'ss of exon 2
tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
                                || |||| |   ||   |   | ||| ||   |   | |||  | || | ||| |          |||||||| |||||||||||||||||||||   || || ||| | |||||||| ||  ||||||| ||||||||||| ||||||||| |||||||||||||||
-------------------------------gtaaaatttctcctttctt-cgtgtgtgctagctc--tttga--tcgtttcgtgctcgaatcctcacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTCTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

upper sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 2
tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
                                || |||| |   ||   |   | ||| ||   |   | |||  | || | ||| |          |||||||| |||||||||||||||||||||   || || ||| | |||||||| ||  ||||||| ||||||||||| ||||||||| |||||||||||||||
-------------------------------gtaaaatttctcctttctt-cgtgtgtgctagctc--tttga--tcgtttcgtgctcgaatcctcacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTTTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148971698|gb|EE022426.2|EE022426
EST:     ACAAGGCCAAGCAG                         GGATATGTTGTTTACCGTGTCCGTGTGAAGCGTGGGGGCAGGAAGAGGCCT
genomic: ACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|37420683|gb|CF648037.1|CF648037
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31612151|gb|CD568773.1|CD568773
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148971699|gb|EE022427.2|EE022427
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78085698|gb|DV514091.1|DV514091
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211423026|gb|FL362762.1|FL362762
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148958704|gb|EC904975.2|EC904975
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60356777|gb|DN223750.1|DN223750
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|93282983|gb|EB675247.1|EB675247
EST:     CGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: CGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|101382141|gb|EB813126.1|EB813126
EST:     CGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: CGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|93283374|gb|EB675638.1|EB675638
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78112794|gb|DV531188.1|DV531188
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78113087|gb|DV531481.1|DV531481
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31664214|gb|CD572939.1|CD572939
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71325076|gb|DR799222.1|DR799222
EST:     GGCCCACCCGCCCGGACAAGACCCGTCGTCTCGGTTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148958703|gb|EC904974.2|EC904974
EST:     AGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: AGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149074390|gb|EE162776.2|EE162776
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71325420|gb|DR799393.1|DR799393
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211532126|gb|FL350197.1|FL350197
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|86474947|gb|DY241317.1|DY241317
EST:     AAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: AAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|9731857|gb|BE510609.1|BE510609
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211197384|gb|FL306830.1|FL306830
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148930419|gb|EE284903.2|EE284903
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|5499068|gb|AI854935.1|AI854935
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|101384800|gb|EB814446.1|EB814446
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78105635|gb|DV524053.1|DV524053
EST:     GCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|29129791|gb|CB380495.1|CB380495
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211529122|gb|FL350185.1|FL350185
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|28873623|gb|CB329588.1|CB329588
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|22713904|gb|BU197434.1|BU197434
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211329125|gb|FL346007.1|FL346007
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|110942618|gb|EE162775.1|EE162775
EST:     CCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: CCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31355299|gb|CD439656.1|CD439656
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|5398768|gb|AI812233.1|AI812233
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71325077|gb|DR799223.1|DR799223
EST:     GGCCCACCCGCCTCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|93011913|gb|EB637433.1|EB637433
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211542993|gb|FL309294.1|FL309294
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGGTGGCAGGAAGAGGCC
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGT-GGTGGCAGGAAGAGGCC
EST: gi|78112793|gb|DV531187.1|DV531187
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|30031772|gb|CB833623.1|CB833623
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAAGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78123294|gb|DV541678.1|DV541678
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148990298|gb|EE031897.2|EE031897
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149100978|gb|EE187075.2|EE187075
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|91054672|gb|EB165090.1|EB165090
EST:     CGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: CGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|76012915|gb|DT940085.1|DT940085
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149079253|gb|EE168223.2|EE168223
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78080100|gb|DV508512.1|DV508512
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60351493|gb|DN218466.1|DN218466
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|93282982|gb|EB675246.1|EB675246
EST:     CGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: CGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|30031777|gb|CB833628.1|CB833628
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60358991|gb|DN225964.1|DN225964
EST:     GACAAGGCCCGTGGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|32833630|gb|CD973308.1|CD973308
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71325422|gb|DR799394.1|DR799394
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149100977|gb|EE187074.2|EE187074
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211381491|gb|FL249895.1|FL249895
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31349970|gb|CD434327.1|CD434327
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|29130273|gb|CB380977.1|CB380977
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|37419568|gb|CF647467.1|CF647467
EST:     GGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60348816|gb|DN215789.1|DN215789
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71441909|gb|DR822959.1|DR822959
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60400339|gb|DN233146.1|DN233146
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|21389932|gb|BQ527981.1|BQ527981
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|76012914|gb|DT940084.1|DT940084
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31558581|gb|CD527793.1|CD527793
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148930120|gb|EC872451.2|EC872451
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31348940|gb|CD433297.1|CD433297
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71435340|gb|DR816390.1|DR816390
EST:     CGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: CGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|20300116|gb|BQ163059.1|BQ163059
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211183118|gb|FL314049.1|FL314049
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|32846518|gb|CD986199.1|CD986199
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31997544|gb|CD661650.1|CD661650
EST:     ACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: ACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149039465|gb|EE046604.2|EE046604
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|32834038|gb|CD973716.1|CD973716
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|32848798|gb|CD988479.1|CD988479
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|89757392|gb|DY687015.1|DY687015
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71770856|gb|DR968793.1|DR968793
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60348156|gb|DN215129.1|DN215129
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148949076|gb|EC894501.2|EC894501
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211522788|gb|FL337756.1|FL337756
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
EST: gi|32848748|gb|CD988429.1|CD988429
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 130

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTCCATCGTCCGCCTCACCAGGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC


Block sizes: 49 (upstream exon), 34 (downstream exon)
Score: 90

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTCCATCGTCCGCCTCACCAGGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC


Block sizes: 49 (upstream exon), 21 (downstream exon)
Score: 76

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTCCATCGTCCGCCTCACCAGGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC


Block sizes: 49 (upstream exon), 19 (downstream exon)
Score: 42

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTCCATCGTCCGCCTCACCAGGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttc ... tcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
                      gtctgac  putative branch site (score: 42)
                                            ttcatcttc  putative PPT
     atatatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

- gtatgct
- - - - - tgttgcc
- - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - -aattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttg